MmuINT0179859 @ mm10
Intron Retention
Gene
ENSMUSG00000063047 | Zfp780b
Description
zinc finger protein 780B [Source:MGI Symbol;Acc:MGI:2444764]
Coordinates
chr7:27974753-27976833:-
Coord C1 exon
chr7:27976740-27976833
Coord A exon
chr7:27974806-27976739
Coord C2 exon
chr7:27974753-27974805
Length
1934 bp
Sequences
Splice sites
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
3' ss Seq
GCTTTCCTTTTGTCCCCCAGGAG
3' ss Score
10.71
Exon sequences
Seq C1 exon
TGCTGCACATCCAACCTCTGCCATTCAAACCGCATTGTCCAGCGTTTCACTGTTCCAATGAGACGACAGGGTCAGATCCCACGTGAGTGACAGT
Seq A exon
GTGGGTATTTGTCTTTTTCTTTAAAGATTAACTCTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTCCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCAGATGCCCTCTCCTGGAGTGTCTGAGGACAGCTACAGTGTATTTACATATAATAAATAAATAAAATTAAAAAAAAAAGATTAACCCTTTATGTTCTTCTTGAAATGCATGTGTGTGGAGTTGTGTGTCCATGAGCACAGGTGGTCTAGGGGCCTGAGGTACAGGATCCCCTGCAGCTTGGGTTCCAGGCACTGTAGCTGTCAGGAGGCTGAACTCCTCTGGAAAAGCCGTAGCGGCTCTCAGCCCCTGAGCCATCCCCAGCCCCAGAGCTTGCCTTCCTCTTTAGCTTATTGCGCGTGTTATTCTCCATGTGCATCCATCCACGTTGTAGTAAGTGGTTCACTGTGCGTCAGCCCCATCCTCCATGTGCTTGGTCCATTCCTCTGTTGGTGGGGTCGCATATCACTGCTATGGAAATGATACTGGAATGAAAGCGAGGGTGTGACTATCTCTTGGAAGTGTATAAAATGTACAAACATTATAAATAGCATAGAATGTAGTCTGCCAACCTGGCTCAGTGGGTGCCGTGCATGCAAGCATGGAACTGTGTAGATGCAGCAGTGCATGTCTGCAATGCCAGCCCTTCTATGACAAGAAGTGGGGTGGAGACAAGAGAATCCCTGGCAGGCTGGCTAGCCTGGTGTACGCAGAGGGAGGAGGGAAGGAAGGATAAAGATAGAAGGAAAATTTGTCTGTAAACTTTCTGGGGATATGAAAATGTAAAATTTCATATAAGATGATCAGATGTGTACTTGAGAGGAGAAGGAGGAAGGAGCAAGAGGTGTTCAAGGTCAGCCTGGTATACAGGAGACGATCTCAAAAACAGATGGACAGTCCCAGAGAGGATTGAATAAAGGCTTAGACCTGTTGGCTAGAGCACTGGGTCCCCATTTGGTGATGACTGCTCCCTGGTGCAGCATCTTAGGGAGGTCTGAGGGTTGTGTGTGCTGCCCAGAGCTTGTGAGTGGAGGGTCAGTGCTGCGGAGTGTAGTACAGAGCACAAGATGGTCCTCACACAGCCCAAGACAGAACAGTTGTGTCAGCCGTGCGGAGGTTGAGAAACTCAGTTCTAGGGGCAAAACACTTATGACGCCCAGACCAAATTTAGTATTATTTTCTTCAAAGTATCGCATATTATGGAGAGAGGGAAACATATACTCACCTCCTGTGACAGAATATTTTATAGTTATTATCTTCATAAAGGATCATGGCTTGAGACAACATAAGCGTTATCATAGATGAGGGAAGGTTCTCAGGAGAGTGGTCCATGGTGCACAGTCCCATTCACTAACAGTGGGCACAGAATGCTGGACGCTGCCTGAGCACTGCAGCCCCTCCAGCCTCGCTGTGTTTCAGCCCTGAGTTTACACAGGAGGGGCCACTTGGATGCTGTGAGCCCCTTTGAGCCTTGATAGGTGGGGTTCCAGTAGGAAGATCTGAGATCTGCGCACAGTAGGAGGAGCGGCCCAGGTGCAGGTCGAGCTGGATCTCAGAGTGGAAGATGGCTCCCTTCTGCTGGACTCTCTGGAGGAGTTCAAGGCAGACATGTTTGTGCCCTGCACTCCCACACTGCCCCCTTGGCAGTGGGTTGTCTGGGTTAGGAGGGGATCGGCTTTTTGTAGACTCCTGTGTGCTTCCAATTTGTGTGTGGGAGGCTGTGAGCGGTGGGAGGGGAGAGAGTGAGTGGGGAGGCTTGAGAAATAAGTGTAGTCGATGACATCACAGTAACATAACTCAGTCTGGGAACATCAAGTCACAATCCAATGAGAGGCTTTCCTTTTGTCCCCCAG
Seq C2 exon
GAGAGGAAGCCTGAAGAAGAATGGCCAACTCTAATTCTCAAGACATGGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063047:ENSMUST00000206685:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types