MmuINT0179859 @ mm9
Intron Retention
Gene
ENSMUSG00000063047 | Zfp780b
Description
zinc finger protein 780B [Source:MGI Symbol;Acc:MGI:2444764]
Coordinates
chr7:28759772-28761852:-
Coord C1 exon
chr7:28761759-28761852
Coord A exon
chr7:28759825-28761758
Coord C2 exon
chr7:28759772-28759824
Length
1934 bp
Sequences
Splice sites
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
3' ss Seq
GCTTTCCTTTTGTCCCCCAGGAG
3' ss Score
10.71
Exon sequences
Seq C1 exon
TGCTGCACATCCAACCTCTGCCATTCAAACCGCATTGTCCAGCGTTTCACTGTTCCAATGAGACGACAGGGTCAGATCCCACGTGAGTGACAGT
Seq A exon
GTGGGTATTTGTCTTTTTCTTTAAAGATTAACTCTTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTCCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCAGATGCCCTCTCCTGGAGTGTCTGAGGACAGCTACAGTGTATTTACATATAATAAATAAATAAAATTAAAAAAAAAAGATTAACCCTTTATGTTCTTCTTGAAATGCATGTGTGTGGAGTTGTGTGTCCATGAGCACAGGTGGTCTAGGGGCCTGAGGTACAGGATCCCCTGCAGCTTGGGTTCCAGGCACTGTAGCTGTCAGGAGGCTGAACTCCTCTGGAAAAGCCGTAGCGGCTCTCAGCCCCTGAGCCATCCCCAGCCCCAGAGCTTGCCTTCCTCTTTAGCTTATTGCGCGTGTTATTCTCCATGTGCATCCATCCACGTTGTAGTAAGTGGTTCACTGTGCGTCAGCCCCATCCTCCATGTGCTTGGTCCATTCCTCTGTTGGTGGGGTCGCATATCACTGCTATGGAAATGATACTGGAATGAAAGCGAGGGTGTGACTATCTCTTGGAAGTGTATAAAATGTACAAACATTATAAATAGCATAGAATGTAGTCTGCCAACCTGGCTCAGTGGGTGCCGTGCATGCAAGCATGGAACTGTGTAGATGCAGCAGTGCATGTCTGCAATGCCAGCCCTTCTATGACAAGAAGTGGGGTGGAGACAAGAGAATCCCTGGCAGGCTGGCTAGCCTGGTGTACGCAGAGGGAGGAGGGAAGGAAGGATAAAGATAGAAGGAAAATTTGTCTGTAAACTTTCTGGGGATATGAAAATGTAAAATTTCATATAAGATGATCAGATGTGTACTTGAGAGGAGAAGGAGGAAGGAGCAAGAGGTGTTCAAGGTCAGCCTGGTATACAGGAGACGATCTCAAAAACAGATGGACAGTCCCAGAGAGGATTGAATAAAGGCTTAGACCTGTTGGCTAGAGCACTGGGTCCCCATTTGGTGATGACTGCTCCCTGGTGCAGCATCTTAGGGAGGTCTGAGGGTTGTGTGTGCTGCCCAGAGCTTGTGAGTGGAGGGTCAGTGCTGCGGAGTGTAGTACAGAGCACAAGATGGTCCTCACACAGCCCAAGACAGAACAGTTGTGTCAGCCGTGCGGAGGTTGAGAAACTCAGTTCTAGGGGCAAAACACTTATGACGCCCAGACCAAATTTAGTATTATTTTCTTCAAAGTATCGCATATTATGGAGAGAGGGAAACATATACTCACCTCCTGTGACAGAATATTTTATAGTTATTATCTTCATAAAGGATCATGGCTTGAGACAACATAAGCGTTATCATAGATGAGGGAAGGTTCTCAGGAGAGTGGTCCATGGTGCACAGTCCCATTCACTAACAGTGGGCACAGAATGCTGGACGCTGCCTGAGCACTGCAGCCCCTCCAGCCTCGCTGTGTTTCAGCCCTGAGTTTACACAGGAGGGGCCACTTGGATGCTGTGAGCCCCTTTGAGCCTTGATAGGTGGGGTTCCAGTAGGAAGATCTGAGATCTGCGCACAGTAGGAGGAGCGGCCCAGGTGCAGGTCGAGCTGGATCTCAGAGTGGAAGATGGCTCCCTTCTGCTGGACTCTCTGGAGGAGTTCAAGGCAGACATGTTTGTGCCCTGCACTCCCACACTGCCCCCTTGGCAGTGGGTTGTCTGGGTTAGGAGGGGATCGGCTTTTTGTAGACTCCTGTGTGCTTCCAATTTGTGTGTGGGAGGCTGTGAGCGGTGGGAGGGGAGAGAGTGAGTGGGGAGGCTTGAGAAATAAGTGTAGTCGATGACATCACAGTAACATAACTCAGTCTGGGAACATCAAGTCACAATCCAATGAGAGGCTTTCCTTTTGTCCCCCAG
Seq C2 exon
GAGAGGAAGCCTGAAGAAGAATGGCCAACTCTAATTCTCAAGACATGGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063047-Zfp780b:NM_001081021:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: