MmuALTD1036636-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000087279 | 4930544D05Rik
Description
RIKEN cDNA 4930544D05 gene [Source:MGI Symbol;Acc:MGI:2148639]
Coordinates
chr11:70616398-70616875:+
Coord C1 exon
chr11:70616398-70616564
Coord A exon
chr11:70616565-70616676
Coord C2 exon
chr11:70616758-70616875
Length
112 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
CTATACTGTCCTCTTAACAGAGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
ATCTCGGCCCTGTGGCTGCAGCAGGAGGTGCAGCGACTGGACGGCGGCAACGACTGCCCAGGCCCAGCCCCAGACACTGGGGATCCTGGTAGGGCGCTGGCCCGTGTAGCCCTGGCCGCAGGGCAGGGGATTCGGCAAGCTGGAACGGCAGCTGGCGCAAGTGCCCG
Seq A exon
GTACCTGATCCAGGGGGCGTGGTTGTACCTGTGTGGACGAGGTTTGCACGGGTCTACCTCATCTCTGCCACAAACCCTATGCCAACTGGGCCTTGGGGTCCCTGGGGATCCG
Seq C2 exon
AGAGACTCGGGAAACCTCAAGGTGTCGCCCAGCAGCAGTGAGGAGAATGGGGGAACAGATAATCCATCACTGTCCCAGTCCAACCCTGTGTCCAAATAAAAGTCCAGAACGGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087279-2-3,3-3,4-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.936
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTGCAGCAGGAG
R:
TTTGGACACAGGGTTGGACTG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types