MmuALTD1036826-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000090063 | Dlx6os1
Description
distal-less homeobox 6, opposite strand 1 [Source:MGI Symbol;Acc:MGI:2443217]
Coordinates
chr6:6820189-6830791:-
Coord C1 exon
chr6:6830648-6830791
Coord A exon
chr6:6830611-6830647
Coord C2 exon
chr6:6820189-6824567
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
CTTTCATTTATAATTTACAGAAC
3' ss Score
8.54
Exon sequences
Seq C1 exon
AGAATTCTATGGACTGATGAAAGATTATCCCTGCAAAAGTCGGTTCAGTTGAGACTTTATTCCGGTTTGGGTGATGTTATAACCAATGAAAAGGAAGCCTGGCGAAGACTGCAATCTTCTCTTCCTTCCCTTTGGGGCTTTATG
Seq A exon
GTAACTGTAGCCTCCTCCTCATGCCCTAGGAATGCAG
Seq C2 exon
AACCAGAGAGAAACCTACGCCCAGAAGAACATGTCCCTGGATTGCTTTCCCACTGCTGTGGAGTGTCTTGAACACTGGTCCCTGGACACCAACTTCAAGAAGACTTCATGGATGGCTGTCCAGTCTTATGAGCCACAGTTTCCCCTCTACATTTTCTTCACTCCAGCGAGGCTCTTATCAGGGTCAGATCAGAGATGAACCAGCTGGACGACAGATTGGAGCGCTGACCTCTTAGAGTGCTAACAGTGAACAGTGTGGGGTCAGATCTATAGAAAGATAATAATAAGAAAACACCCTATATGCAAGGGAGAGGGATGGTTCATAATTTCTTAAAGATTGAAATCAAGGAACAATCAAAATATAGAAGAATGTGGACGTGTTTTGCTGCAGGACTTCTGTTTTGTCCCCATTGGAATATGTATTATGGTATTCCTGTTGGATCAGGACTCAGGGGCAAGGCTAAGCATTCCAGTGGTCCTCCTACTTAGCTCTTGTCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090063-5-8,6-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGAAGCCTGGCGAAGA
R:
AGCAGTGGGAAAGCAATCCAG
Band lengths:
114-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types