MmuEX1029365 @ mm10
Exon Skipping
Gene
ENSMUSG00000090063 | Dlx6os1
Description
distal-less homeobox 6, opposite strand 1 [Source:MGI Symbol;Acc:MGI:2443217]
Coordinates
chr6:6820189-6871592:-
Coord C1 exon
chr6:6871489-6871592
Coord A exon
chr6:6869309-6869787
Coord C2 exon
chr6:6820189-6824567
Length
479 bp
Sequences
Splice sites
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACAGAGCCTCTGCCCTGAGACTCAGAGAAACGCTCTCCTGTGCCTCCCTCCGCTCAGTATAGATTTCTAGACCCTGATCATTGCTTAAGAGATATTCACCGGG
Seq A exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACGAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGCTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGCGTGGAAGTTGCTCAACAAAAAAGGGAACGGGGATATTG
Seq C2 exon
AACCAGAGAGAAACCTACGCCCAGAAGAACATGTCCCTGGATTGCTTTCCCACTGCTGTGGAGTGTCTTGAACACTGGTCCCTGGACACCAACTTCAAGAAGACTTCATGGATGGCTGTCCAGTCTTATGAGCCACAGTTTCCCCTCTACATTTTCTTCACTCCAGCGAGGCTCTTATCAGGGTCAGATCAGAGATGAACCAGCTGGACGACAGATTGGAGCGCTGACCTCTTAGAGTGCTAACAGTGAACAGTGTGGGGTCAGATCTATAGAAAGATAATAATAAGAAAACACCCTATATGCAAGGGAGAGGGATGGTTCATAATTTCTTAAAGATTGAAATCAAGGAACAATCAAAATATAGAAGAATGTGGACGTGTTTTGCTGCAGGACTTCTGTTTTGTCCCCATTGGAATATGTATTATGGTATTCCTGTTGGATCAGGACTCAGGGGCAAGGCTAAGCATTCCAGTGGTCCTCCTACTTAGCTCTTGTCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090063-'0-8,'0-1,1-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGCTCTCCTGTGCCTC
R:
TCTGACCCCACACTGTTCACT
Band lengths:
342-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types