HsaEX0019938 @ hg38
Exon Skipping
Gene
ENSG00000231764 | DLX6-AS1
Description
DLX6 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:37151]
Coordinates
chr7:96955141-97014065:-
Coord C1 exon
chr7:97013925-97014065
Coord A exon
chr7:97012181-97012303
Coord C2 exon
chr7:96955141-96969118
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTCACACCTGGATGTGCTCACTCAACCAAGAATATAGAGAAAGAGCTTCTGCCCTGAGACTCAGAAAAATATTCTCCTGTGCTTTGGTTCAGTATAGATTTCTAAACCCTGATCATTGCTTAAGAGATATTCACTGAGG
Seq A exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAG
Seq C2 exon
TTGCTGAGACAAAGGAAAACCCACTCCCTTGGAGGAGCATGACCTTTTCCTGTAATTCTTCCCACTGCTGTTGTTGAGCTCCTTGGATCCTGGCTCCTGGACACCATCATCAAGAAGACTTTATGGATGGGCTGTCCACCCACTGAGAGAAGAGGAGCATCAGCTACAGTTTCTCTCTAGATTGCCTTCTTCATTTTGAGTAATGACTGTCAGCAGGGTCAGATTAAACACAAAACAACTGGACAATTGCTTGGAGGACTAAACTATAAGGGCACTAACATGTCAATAGTAGGCTAACACATCCATGGAAAATATATTTACCAGCTCTTCTCTCAGGGAGGATTCTGTGTGGGGTTGGAAGTAATGATTTGTTAAATTCCTTAGGGGTAGAAAGTAGGGCATAATCAGAATATAGAGGAATATGCTGTTTGACTTCAGGGTTTCTGTTTTTCTTACTAGGATATATAAAACAGGGACTCTAGCTAGATTGTTTATGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231764-'0-8,'0-0,1-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCTTCTGCCCTGAGACT
R:
GCTCCTCTTCTCTCAGTGGGT
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development