HsaEX0019938 @ hg19
Exon Skipping
Gene
ENSG00000231764 | DLX6AS
Description
DLX6 antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:37151]
Coordinates
chr7:96607659-96643377:-
Coord C1 exon
chr7:96643237-96643377
Coord A exon
chr7:96641137-96641615
Coord C2 exon
chr7:96607659-96608903
Length
479 bp
Sequences
Splice sites
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATTTCACACCTGGATGTGCTCACTCAACCAAGAATATAGAGAAAGAGCTTCTGCCCTGAGACTCAGAAAAATATTCTCCTGTGCTTTGGTTCAGTATAGATTTCTAAACCCTGATCATTGCTTAAGAGATATTCACTGAGG
Seq A exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACGAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGCTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGCGTGGAAGTTGCTCAACAAAAAAAGGAACGGGTATATTG
Seq C2 exon
ACAGAGTCTTGCTCTATTGCCCAGGCTGCAACTGGTGTGATCTCGGCTCACTACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAAGCTCCCAAGTAGCTGGGATTACAAGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCACATTGGCCAGGGTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAAGCATGAGCCACTGCACCCAGCCTTATACTGAACTTTCAATGGGTTCAATTCCACTAGGAGCATAAAGGCCACTGCATATGAGTTGTGGAAAGAAGAGATTAGAAGAAGGAAGAACTTGAGATGAGTTCCTCCCTTCAACATTCTGTCTCCTCCTACCTAGCATCTTCTTTCTTTTAGTCTTTCTAGAATGTCCATCTGTTTTTGGCCATTGCGGAGAGAGAAGCTGAGCTTTAAAGGAGTAGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231764_MULTIEX1-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATGTGCTCACTCAACC
R:
GCAGGTGGATCACTTGAGGTC
Band lengths:
357-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)