RnoEX0003500 @ rn6
Exon Skipping
Gene
ENSRNOG00000051264 | AABR07059679.2
Description
NA
Coordinates
chr4:32333356-32381501:-
Coord C1 exon
chr4:32381402-32381501
Coord A exon
chr4:32379295-32379773
Coord C2 exon
chr4:32333356-32336637
Length
479 bp
Sequences
Splice sites
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACAGAGCTTCTGCCCCGAGACTCAGAAAAATACTCTCCTGTGCCTCGGCTCAGTATAGATTTCTAGACCCTGATCATTGCTTAAGAGAGATTCTCTGGG
Seq A exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACAAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGGTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGTGTGGAAGTTGCTCAACAAAAAAAGGAACGGGGATATTG
Seq C2 exon
CTGCTGAGAACCAGAGGGAAACCTCCTCCCAGAAGAACATTTCCATACACTGCTTCCCCACTGCTGTGGAGTCCCCTGAACACTGGTCCCTGGACACCAACTTCAAGAAGACTTCGTGATGGCTGTCCAGTCTTATGAACCACAGTTTTCCCTGTGTGTTTTCTCCAGTGATGCTCTCATCTGGGTCAGATTAGAGATGAACCAGCTGGAGAACAGATTGGAGCGCTGACCTCTTAGAGTGCTAACAGTCAACAGTTTGCTGTCAGACCCATAGAGAAATAATAAAAATACGTTCCATGCAAGGGAGTGGGATGTTTATAATTCCTTAAAGGCTGAAATCAAGGAACAATCAAAATATAGAGGAATGCGGACTTGTTTTACTGCAGGATTTTTGTTTTGTCCCTACTGGGATACATATTCTGGTGTTACTACTGCATCAGGACTCAGGCAAGGCTATGTATTCTAGTGGTGCTCCTACTTAGCTCTTGTGCTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051264_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCCCGAGACTCAGAAAA
R:
CAGCAAACTGTTGACTGTTAGCAC
Band lengths:
353-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]