RnoINT0006732 @ rn6
Intron Retention
Gene
ENSRNOG00000010822 | AABR07059679.1
Description
distal-less homeobox 6 [Source:NCBI gene;Acc:500023]
Coordinates
chr4:32374929-32377253:+
Coord C1 exon
chr4:32374929-32375122
Coord A exon
chr4:32375123-32377001
Coord C2 exon
chr4:32377002-32377253
Length
1879 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GATTACTACATGTCTTGCAGGTG
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATCAACAAAAAACGACAGTGATCGAAAACGGGGAAATCAGGTTCAACGGAAAGGGGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCACCGCTTTCAGCAGACTCAATACCTGGCCCTTCCAGAGAGAGCCGAACTGGCTGCTTCCTTAGGACTGACACAAACACAG
Seq A exon
GTAATTCCCGGGAAGCCCGAGTACCCCTGAAATGCTGGCCCCGCTTGCTAACCGTGCAGAAAGCACACCAGGAGGAATTCTTGGCCTAGTCAACCAAGGATGGAAGGAGCTAAATGACAAATGCCTGTGCTCCAGTTGTGCACTTTCCTGGGATCACAGTTTGGAACAAATGACCTGGTATTGAATACTGGATTGGATTTGCATATACACCAACCCTCTGCGACCCCAGCTGAGCCTAGGATCTTTTGGTGAACAAATTCAATCAAATCTTATTCCAGAACAGAATAACATGAAGTAGAACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTGGTGTGTGTGTGTCTGTGCGTGCATGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGGTGTATTGGGGGTATCCAGCTAGAAAGTAAACTAAGGCCCTTTCTTAAGGACCCTTTAGTGGTCCCTAGAAACTAATGAATTTCAAGTCATTGTCATAGGAAGGAAACTTGGGAGCTGAGACTAGCAGCAAAAGTTAAATAGACATATTTTCTAGTAGCTTAATAAGGCATCTATAGGTAAGCTATTCACTCCAGGATGGGTAAGATAGGGTTTTATGAAAATTGCTTTAAGCTCTGTAGTCAAATCAAACAGTGCAGGTTGAGATACCTCCCTGGAGCACAGAACTTGACAGAATTGGGAAACAAAGAGAATGCTCCCCAAATCATGGCCTGGGACACCACAGATAACAGTCCTGCTGACCTGAAAGCTATACTGGACATTTCAGATTTCCCAGAAAGGGGCCTAGCGGTGAGTACAGCAATCTGCACTTTAAAGCCAGCAGTCAAGCAAGACAACTGCACGGGATGCTAAGGCCTCTTCTGATGTTCACCCTCTCTATCCAGCAAGGGTCCTGCAGGTCTAATAACACAGTTGCCAAGACCTTACAGAACTGTGTCTTCAGGCTGCATCCCTGAGCTCTTCTCAGCCAGCCTGGTTTCTATTGCCATGTTGCCTCTTGAGAATATTTGAGGTTTGCTAGGAAAGGGCTCAAGATGCTCTTGTTCTTGGAAAAAACAGATTCTGGGATTTTAAAGGTAATGCTACATTGTAGGTTTTCTTTCATCCAAAGATTTGACTTGTTGACTTAAGTCAGCTGCCAACTTAGATTCCTGATTCTGGAGTTTTCAGAAGCCTTTGACTTTAGTAGATATCCCAACAATCATGTGATGATTGATGACTTCTGTTTGCTTTAGCAACATAGGAGGTAGGGAGTGGGGGCTGGCGCATTTCTTAATCTTTGCAGGACTGGAGAATATTTATGTCTGGAGAAAGCTATCCCAGACATATCCTATGGCATGTGCACAATATGCATAGGTATGTTTGAGGAATTTTGTTGTGAACATACAACCTTTAACCAATTCATAATTGTCTACTACTTGAATATACATAGCATAGTGAACTTGGGGATTGGTAAATATGAACACTGAATAAACCAAGGGAGGTAAATTCTGCTGTAGAATTGTGAGTCAAACTCTATTCCACTTAAAAGTCCTTCATAAAATTTTAGGTCCACTGATCTCATTTGATTTTTTTTCTAAGTTTATGCTGATACTTTAAAACCCAGGCTATAGGATTAAACTCAAGAATCACAAGAACTATAGGTATCCTAATAAGATATCTAACAGGCCTAGAGTGGAGGGATGGAGATGGTTTGGAAGAGGGAAGGGAGGGGGAAAGGAATGCCAAGGGGTGTTTTGTTTGTTTGTTTGCTTGTTTGTATATTACTTCTTAGGTCTGGGATGACACTGAAGGCACCAGTATGATGTCCGTCTGGCCTAACGATTACTACATGTCTTGCAG
Seq C2 exon
GTGAAGATATGGTTTCAGAATAAACGCTCTAAATTTAAGAAATTGCTGAAGCAGGGTAGTAACCCACATGAGAGTGACCCCCTCCCGGGTTCAGCAGCCCTGTCACCACGCTCACCAGCCCTGCCTCCAGTGTGGGACGTTTCCGCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTATATGCCTGGGTATTCGCACTGGTATTCCTCACCACACCAGGACACCATGCAGAGACCACAGATGATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010822:ENSRNOT00000076086:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.554
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=64.6)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGGAAATCAGGTTCAACG
R:
GCTGTTGGGAGGCATACTGAC
Band lengths:
347-2226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]