BtaINT0049791 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021458 | DLX6
Description
distal-less homeobox 6 [Source:HGNC Symbol;Acc:HGNC:2919]
Coordinates
chr4:14278761-14281435:+
Coord C1 exon
chr4:14278761-14278954
Coord A exon
chr4:14278955-14280799
Coord C2 exon
chr4:14280800-14281435
Length
1845 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GCTGCTGCGTTTCTTTCTAGGTG
3' ss Score
10.37
Exon sequences
Seq C1 exon
ATCAACAAAAAACCACAGTGATTGAAAATGGGGAAATCAGGTTCAATGGCAAAGGGAAAAAGATTCGGAAGCCTCGGACCATTTACTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACTCAGTACCTGGCGCTTCCCGAGAGAGCTGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
Seq A exon
GTAATTCCAGAGAAGCCCTGAAATGCTGACCCTCACTTGCAGATCGGGCAGGGAGCTCATCAGGAGGAATTCTTGGCCTAGTCAACCAAAGATGGAAGGAGCTTAATGACAAATGCCTTTGCTCCAGTTATGCACTTTTCTGGGACAACACAGTTTGGAATAAATGACCTGGTATTGAATACTGGATTGGATTTGCACATCCTCCCCCCCCCCCCCCCTCAGCGACCCCACCCCAGCCTAGTTCCTTTGGTGGTCAAACTCGTTATTTAATCAAGTCCTATTCCAGTAGAGCAACACAAAAGAGAGCAAACAAGTAGGAGAAAGAGAAAAAGATATTCAGACCAGGCGGGCAGTATAAGACCCATGTTTCTTAAGGATCCTTTTGTGGGCCCTGGGACTTTAAGAGGATTATAACTCATTGACATTGAAAGAATTATGAAGTGAAAAGGATGGGTTAGCCAGACATGCACAGGTTCCAATAGGATTTGGTAAAGTGACCAAGGTGAAAACTGTTCATCCTAGGATGGGTGAGGTGAGTCTTTCTGAAAATTGTCCTCAGTTCAGTTGGTTAAATCATCCTGGTTGACTGGCTGGTGCAGGCTAAGGAATCTGGATCACAGAATTTGGGCATAATGGCAGAGCCGGAGATCAAAGAGGAATGTGCCCAAATTATAGCAGATGAAGCCTCGGTTAAGTACAGTTGCTGAAGTTCTCCGGTCTTACTAATTTGAAAGACATATGGGGCATTTTAGACTTCACAGGAAGAGGTTTTAGGTAGGTATATTAGGACCCTTGTCAGAGAGCCAGGCTGCAGACACCTGAGGTTTTTGTCCCTGTCGATTAACTTGGCTGCATGGGGTGGTAGGCCTCATCTGAAATGGATGCTCTTCAGCAAGGGGACATCAGGTCTCTGAGACCCTGGCTGGGGACTGATTGTGTGCTGAGACTGAGACTGACTGTCTCAGCACAGATGCTCCTTAAGCTCTTTCTTTTCAATTCAGCCTGCTTTCTCTCACCATGATGCCACTGGAAATATTTGGGGTTTGAGATGAAGGGATTCCTGCTATTCAGTAACTTGTACTCCTTTTGGAAAAGCAGATTCCTAAGGCTAAGTAATTTTAAAGGTAAATGAAGCTGTACCATAGAAGGTCCTTCTTCACATAAAGTAGATCTGGGATGTTAGCTTGGATACGCTCCTATCCTAGACTCCTGGTTTGCATTTAATATTCAGGAGCCCTTTGACTTTTAGTGCCTGCTCTAACAATCATGACCACAATTTGACTAAACAACATACCAAGTAGGGAATGAATGAGGCACAGTCACTCATTGCTGCAGGATTATGTCAGAAGAAAGGTGCTCCATGTACAGTGGGTGGCATATGCAGTGTATGCCTATGTATGTATATTCAACGCGTTTGGGTTTTAAACTGCTCTCAGTCGTTTGCTCAGGGCACATCCAGACTATTAGAGGAAGTGCATCCAGTTAGCTTCAATCTGAAAAATTCACCGTGTAAAAATCCTCCTTTAGAGTTTGAACCTGGCTATCTCCTTGGCCTTTATTCTAGTTTTATTCTTATGCTGTTGTTTCAAACCTAGGCTTCTATCTAACTGAGAAGTTACAATGACTTTAGGTATCCCGACAAGATACCAAGTAAACCAAGTAAACGGCGGGCGGGTAGGGTGGGGTGGGGTGAAGTGGCGGGGAGAGGGGAGCGGCTAGAAAGAAGTGGAGGAAGGCGGGGTCTTGAGGGCTTCGCGTTGGCGGGTTGTCTTTTTTTCTTTTTTCACTGTAGGCACCGGTTCAATGTTTTTCGGGCCTAATGATCGCTGCTGCGTTTCTTTCTAG
Seq C2 exon
GTGAAGATATGGTTTCAGAACAAACGCTCTAAGTTTAAGAAACTGCTGAAGCAGGGCAGTAACCCGCACGAGAGCGACCCTCTCCCGGGCTCCGCGGCCCTGTCGCCGCGCTCGCCGGCGCTCCCTCCGGTGTGGGACGTTTCCGCCTCGGCCAAGGGCGTCAGTATGCCCCCCAACAGCTACATGCCCGGTTACTCGCATTGGTACTCCTCTCCACACCAGGACACGATGCAGAGACCACAGATGATGTGAGTTATCCAAGGGCAAAAGATACCCTAGGGCGACGTCTGAACAAGGCAAGGAGGATCCGGGACCTGCTTGCATCTGCCAAACCGAGCCGAAGGAGCAGGCTCGGGAGAACTCTTACGTGTGGCCAGACTGGGCGCTTGTTCCCTTCTCTCTCCTCTCCCATCCCCTTGGTCTCTCTCTCTCATACTCTGCCTTTTTCTTTTTTTGCCTCCCTCCTTCCCGCTTTTCTTTTTAAAATTCCTTTCTCCACCTGCCTTTTCCCTTGAGCAGCCTCAGTAATTGATTTTGAATCTTAGAGAGAGAGAAGGAGAAACAGAGAGAGAGAGAGACTGGTTTCTAAGCCAGTGCTCCTGAAGCCTCTCACTGTAAGGATATTTTCCCTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021458:ENSBTAT00000028605:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.554
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=64.6)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAGCTTCCTTAGGACT
R:
CGGATCCTCCTTGCCTTGTTC
Band lengths:
344-2189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]