RnoINT0006733 @ rn6
Intron Retention
Gene
ENSRNOG00000051264 | AABR07059679.2
Description
NA
Coordinates
chr4:32379295-32381501:-
Coord C1 exon
chr4:32381402-32381501
Coord A exon
chr4:32379774-32381401
Coord C2 exon
chr4:32379295-32379773
Length
1628 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GACAGAGCTTCTGCCCCGAGACTCAGAAAAATACTCTCCTGTGCCTCGGCTCAGTATAGATTTCTAGACCCTGATCATTGCTTAAGAGAGATTCTCTGGG
Seq A exon
GTAAGTTTTTTATTTCTGGCATATTTACTTCTAGGCACTGTTTTTATTAATTGTCTCAACCTCTGTAAGCTCTATATGATACATTCTTGTGATTTCCTTGAATTGCAACTTTGTTTTCAAGGTTTAGGTTCTGACCGAGAATCTTCCTTTAACAGTTAAGAGTTGATCTGGTGAGGATGGGCTCTTTAAGAACCTGACTTGCCTGTCTTGCTTCTGTGCCGCTGATGCGTTTGGTGTGGTTTGTCACTGGAGACTAGGAAAGGACCAGGTTTCTGTGAGGTGTGGAAGGGGCCTGAAAGGCCAAGCTAAAAAATCTACCTGAAAACTGTTACTTACAATTGATCTTAAGTAAATACATTGAGGTTTTTACATGCGGCCATGATTTTAGGTTCTGGGGCATCAAGAGATCAAACAAAACTGGCTGTGTGGCTTGTTCTTTGCAGTCAGCCGTGCGGAGGGATGTTAGCAAAAGCAGGTGTGCCTGAATCTCTGGGCATTGCAGCCCTTTGGACATCTCTCCAGCTGGGGGAAAGTTAGAATAAACGGCACCTTCAAGGATGCTCCTTAGGGCCTTGCTTAGAACTGTAGTCTCTGTCTCTGTCTCTGTCTCCCTCTGTCTCTGTCTCTGTTTCTGTCTTGTAGGGGGGTGGGGAGTGGGGGAGGGGAAGGTATCCAGATCGTGGAGCTTATTGCCTGCCGAGACCAAATTCTGTGATCCTGGGCTTAGAGGGGGGAATGATTGGTTGGGACACAGAACTGACAACTTAGGAAGCCAAGGAACAAGTCTCATCTATGTACCAAGGAAGATATTGGCCACAAGCTGTGCTGTTCTCTCTCTAGATGACGCTGTTTCCTGACCCTGTAAATTTTATAAGTAGCTAGGAGCGCTTAGTGTAGGATCCCACACCATCTTTGACTGTCCCACCCTGCAGAGAAAAGCTTCTCTACCGTAGCAAGAACCTTTGCACTAAGTTGTGTCCAAAGATAACGCGGTGTTTATTTATTAGAGAGGAGGAGAAATGGTCTCTCTCCTATATTCTTACCCAATAGCTATGCTTCCCACTCCAACACCTCAATGTGGTCAGAACAGGGCTTGGGAACTCAAACTCTACAGCCTAGTAGGGAGTTTGACCGAGGGGAGGCGTAGTAGACACCTCAACTGGCAACGCCTTTCACCCTTGCTCCTCCTACCAATCCCTCCCAGGAGAGCCAGTTTCCTTGGGGGTCAATACATTTTTAAAGGAGAAAAAAAATATTAACCCTTGAAGTTCGGGGGATCCTGTGGGAGCCCAGCTCTAAGCAGGGTTCCAGGGAACTATCTGACAACATCTCTGTAATTAAGCTCCTGTTAAATGAGAGAGAAAGATGGGTGCAGAGGTAACAGTACCCCACCTCCAACATAGTAACATACATTTTCTGGGTTTCAGGATTTCTATACACTCACAGTGGTTTGGCATATATTTGGTGAATTTATTTTTAAGGAAAAAAATTAGTGTTGGTTTCGATATATGGTAGCTTTCTCTCTAACATAATTTGAATAATTCAGCAAAGCCCCACTACCAGCTGCTCTTCTGCAGCCCTTTTCCATTCTTTTCAGCATTATAATTTTGGTTAATTTTCAATTTTAG
Seq C2 exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACAAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGGTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGTGTGGAAGTTGCTCAACAAAAAAAGGAACGGGGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051264:ENSRNOT00000076124:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTCTCCTGTGCCTCGGC
R:
GCTGCAGTGCCATCCAATTTG
Band lengths:
350-1978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]