MmuINT1008671 @ mm10
Intron Retention
Gene
ENSMUSG00000090063 | Dlx6os1
Description
distal-less homeobox 6, opposite strand 1 [Source:MGI Symbol;Acc:MGI:2443217]
Coordinates
chr6:6869309-6871592:-
Coord C1 exon
chr6:6871489-6871592
Coord A exon
chr6:6869788-6871488
Coord C2 exon
chr6:6869309-6869787
Length
1701 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGGTTAATTTTCAATTTTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GACAGAGCCTCTGCCCTGAGACTCAGAGAAACGCTCTCCTGTGCCTCCCTCCGCTCAGTATAGATTTCTAGACCCTGATCATTGCTTAAGAGATATTCACCGGG
Seq A exon
GTAAGTTTTTATTTTTGGCATACTTCTAACTTCTAAGTACTGTTTTTATTTCTCCTCTCAGACTCTCCAAGCTATATACAATATGTTGTTGTGATTTACTTGAATTGCAACTTTGGTTTCAAGGTTTGGGCTCTGACCTTTTATTTTCCTTTAACAGTAAGAGTTGATCTGGTGAGAATGGGATCCCTAAGAACCTGACTTGCCTGTCTTGCTTCCGTGCGACTGATGTGTTTGGTGTAGTCTGTGACTTGAGACGAAGAAAGGACCAGGTTTCTGCGAGTTGTAGAAGGAGCCCGAGAGTCCAAGCTAAAAATCTATCTGAAAATTGTTACTTACAATTGATCTTAAGTAAATACATTGAGGTTTTTATATGCGGCCATGATTTTAGGTTTTGAGGCATCAGAGATCAAACAGAGCTGGCTGTGTGGCTTGCTTCTTTGCAGTCAGCTATGGGGATGGATGTTAGCAAAAGCAGGTGTGCCTGAATCTCTGGGCTTTGCAGCCCTTTGGGCATCTTCTCTCCAGCTGGGGGAAAGTTTGTAGAATAAATGGCATCTGAAACCCTTCAAGGCTGTTCCGTAGGGCCTTGCATAGAGCTGTAGTCTCTGTCTCTCTGTATCTCCCTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGCAGAGGGGAGTGGGGAGTGGGGGAGGGGAAGGTATCCAGACCGTGGAGCTTATTGCCTGCTGAGCCCAAATTCTGTGATCCTGGGCTTAGAGGGGGATGATTGGTTGGGACACAGAATCGACAACTTATGAAGCCAAGGAACCAGTGTAGTCTATGTACCGAGGAAGATATTGGCAACAAGCTGTGCTGTTCCGTCTCTAGATGACGCTGTTCCCTGACCCTGTAAATGTTATAAGTAGCTAGAGTGCTTAGTATAGGATCCCACAATGTCTTTGACTGCCCACCCTGCCGAGAGAAGCTTTTCTACCATGGCAAGAACCTTTGCACTAAATTGTGTCCAAAGATAATGTGGTGTTTATTTGTTAGAGAGGAGGAGAAGTTGTCTCTCTCTTATATTCCTACCCAATAGCTATGCTCCTCACCCCAGCCCTTTAGTATAGTCAGAACAGGGCTTGGGAACTCAAACTCTACAGTCTAGTAGGGAGTTTGAACATGGGGAGGCGCAATAGACACCTCAACTGGCAACACCTTTCACCCATGCTCCTCCTACCAATCCCTCCCTCGGGGAACGAGTTTCCTTGGGGGTCAATACATTTTAAAGGAGAAAAAACTATTAACCCTTGGAGTTCAGGGAATCCAGTGGGAGCCCAGTTCTAAGCAGAGTTCTAGGGGACTATCTGACAGCATCTCTGTAACTAAGCTCATGTTCAATAGGAGATAAAGATGGATGCAGAGGCATCAGCCCCACCTCCAACCTAGTAATAAACATTTTCTGGTTTCAGAATTCTATACACTCACAGTGGTTTGGCATATATTTGGTGAAATTTTTTAAGGAAAAATTAGTGTTGGTTTCGATATATGGTAGCTTTTTCTCTAACATAATTTGAATAATTCAGCAAAGCCCTACTACCAGCTGTACTTCTGCAGCCTCTTCCATTCTTTCCAGCATTATAATTTTGGTTAATTTTCAATTTTAG
Seq C2 exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACGAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGCTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGCGTGGAAGTTGCTCAACAAAAAAGGGAACGGGGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090063:ENSMUST00000159568:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCTCCGCTCAGTATAG
R:
AGCTGCAGTGCCATCCAATTT
Band lengths:
342-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types