HsaEX0019939 @ hg19
Exon Skipping
Gene
ENSG00000231764 | DLX6AS
Description
DLX6 antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:37151]
Coordinates
chr7:96594839-96641615:-
Coord C1 exon
chr7:96641137-96641615
Coord A exon
chr7:96607659-96608903
Coord C2 exon
chr7:96594839-96598430
Length
1245 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTCTTTCAGACA
3' ss Score
11.5
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTCCTACGTCTCTGCAATTTGTGTATGAATAACAGAATAATTTCCCTCTTTTGTTTCGCCTTTCCTGTTCCTGAATCTAAATAAAGATGGCTTTTTAGTATTAAAAGTGGAAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATGAAAAATTACTCTAATTATGGCTGCATTTAAGAGAATGGAAAAAAACCTTCTTGTGGATAAAAACCTTAAATTGTCCCCAATGTCTGCTTCAAATTGGATGGCACTGCAGCTGGAGGCTTTGTTCAGAATTGATCCTGGGGAGCTACGAACCCAAAGTTTCACAGTAGGAAGGGGGAAAAAAGAAAAGAAAACATTTTTCCTAATGTAACAATGCGAATGCTAGAAAATGACAAGACTGATCGGTTTTAAACCATTCTGAAGACTGACTGAGCGTGGAAGTTGCTCAACAAAAAAAGGAACGGGTATATTG
Seq A exon
ACAGAGTCTTGCTCTATTGCCCAGGCTGCAACTGGTGTGATCTCGGCTCACTACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAAGCTCCCAAGTAGCTGGGATTACAAGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCACATTGGCCAGGGTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAAGCATGAGCCACTGCACCCAGCCTTATACTGAACTTTCAATGGGTTCAATTCCACTAGGAGCATAAAGGCCACTGCATATGAGTTGTGGAAAGAAGAGATTAGAAGAAGGAAGAACTTGAGATGAGTTCCTCCCTTCAACATTCTGTCTCCTCCTACCTAGCATCTTCTTTCTTTTAGTCTTTCTAGAATGTCCATCTGTTTTTGGCCATTGCGGAGAGAGAAGCTGAGCTTTAAAGGAGTAGGAGCTTCAAAGGCGTAGGAGCTTCAAAATTCTTGTTTCTTCATGTTTGATCACCCTTCTAAACCTGTCTTCTGTTCCTTCTGCTATTCTTTTTTCTTAGAGCATAGGAAAGGGGAGCTTTTAAATTAATACTTAAAGCATGGAAAAAAAGAACTTGAGAAGAAAGTAAAACAAGGGAGATGAGGCTAGTAAAGTAAGGAAAATGAAGAGGAAGAGGAGGAAGGGTTAGCTTCTAAATTCCAAGTCAAATTGATATGGAACAGGCAAGCCGCTTGTCTTACTTAAACTTCAGAAAAGGATCTGCTGAAACTTGATAGAAATGGAAAGGGAAATCCTTGGGGTGGGGAACCTCCAAACATTAGTAATGATATTGAACAACTCAAAGTATTGAGGAAATCTGCAGGCTACATGCCTGAAGATTACCCATGCAGATAGACCAAAAGGATTAGAATTATCTGTTGATATTAGTAATATTTATTGACATCTAGCTAGTATTGGTAATTTTAAGTTTTAGATTAATTTCTTTGGTAATAGCTATGATATATTTTATAGACAAGAATTATATCTATAGGCTTGCTATCATAGGCTCTTTTAATCAGCATTAATTTAGTCTACTGATTTTTAGCACATTTGAATCATTCACTTATGCTAGGTAACTCATTGCAAAATAAAAAGATGATTCCTGTATGTATGGCAGCTATACATTAAGGAGGAGTCTACCAGAATATGAAAAAGTCAGCTGACCTAAATA
Seq C2 exon
TTGCTGAGACAAAGGAAAACCCACTCCCTTGGAGGAGCATGACCTTTTCCTGTAATTCTTCCCACTGCTGTTGTTGAGCTCCTTGGATCCTGGCTCCTGGACACCATCATCAAGAAGACTTTATGGATGGGCTGTCCACCCACTGAGAGAAGAGGAGCATCAGCTACAGTTTCTCTCTAGATTGCCTTCTTCATTTTGAGTAATGACTGTCAGCAGGGTCAGATTAAACACAAAACAACTGGACAATTGCTTGGAGGACTAAACTATAAGGGCACTAACATGTCAATAGTAGGCTAACACATCCATGGAAAATATATTTACCAGCTCTTCTCTCAGGGAGGATTCTGTGTGGGGTTGGAAGTAATGATTTGTTAAATTCCTTAGGGGTAGAAAGTAGGGCATAATCAGAATATAGAGGAATATGCTGTTTGACTTCAGGGTTTCTGTTTTTCTTACTAGGATATATAAAACAGGGACTCTAGCTAGATTGTTTATGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231764_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATCCTGGGGAGCTACGA
R:
TGCTCCTCTTCTCTCAGTGGG
Band lengths:
342-1587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)