HsaEX0019939 @ hg38
Exon Skipping
Gene
ENSG00000231764 | DLX6-AS1
Description
DLX6 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:37151]
Coordinates
chr7:96955141-97014065:-
Coord C1 exon
chr7:97013925-97014065
Coord A exon
chr7:96978347-96979591
Coord C2 exon
chr7:96955141-96969118
Length
1245 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTCTTTCAGACA
3' ss Score
11.5
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
ATTTCACACCTGGATGTGCTCACTCAACCAAGAATATAGAGAAAGAGCTTCTGCCCTGAGACTCAGAAAAATATTCTCCTGTGCTTTGGTTCAGTATAGATTTCTAAACCCTGATCATTGCTTAAGAGATATTCACTGAGG
Seq A exon
ACAGAGTCTTGCTCTATTGCCCAGGCTGCAACTGGTGTGATCTCGGCTCACTACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAAGCTCCCAAGTAGCTGGGATTACAAGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCACATTGGCCAGGGTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAAGCATGAGCCACTGCACCCAGCCTTATACTGAACTTTCAATGGGTTCAATTCCACTAGGAGCATAAAGGCCACTGCATATGAGTTGTGGAAAGAAGAGATTAGAAGAAGGAAGAACTTGAGATGAGTTCCTCCCTTCAACATTCTGTCTCCTCCTACCTAGCATCTTCTTTCTTTTAGTCTTTCTAGAATGTCCATCTGTTTTTGGCCATTGCGGAGAGAGAAGCTGAGCTTTAAAGGAGTAGGAGCTTCAAAGGCGTAGGAGCTTCAAAATTCTTGTTTCTTCATGTTTGATCACCCTTCTAAACCTGTCTTCTGTTCCTTCTGCTATTCTTTTTTCTTAGAGCATAGGAAAGGGGAGCTTTTAAATTAATACTTAAAGCATGGAAAAAAAGAACTTGAGAAGAAAGTAAAACAAGGGAGATGAGGCTAGTAAAGTAAGGAAAATGAAGAGGAAGAGGAGGAAGGGTTAGCTTCTAAATTCCAAGTCAAATTGATATGGAACAGGCAAGCCGCTTGTCTTACTTAAACTTCAGAAAAGGATCTGCTGAAACTTGATAGAAATGGAAAGGGAAATCCTTGGGGTGGGGAACCTCCAAACATTAGTAATGATATTGAACAACTCAAAGTATTGAGGAAATCTGCAGGCTACATGCCTGAAGATTACCCATGCAGATAGACCAAAAGGATTAGAATTATCTGTTGATATTAGTAATATTTATTGACATCTAGCTAGTATTGGTAATTTTAAGTTTTAGATTAATTTCTTTGGTAATAGCTATGATATATTTTATAGACAAGAATTATATCTATAGGCTTGCTATCATAGGCTCTTTTAATCAGCATTAATTTAGTCTACTGATTTTTAGCACATTTGAATCATTCACTTATGCTAGGTAACTCATTGCAAAATAAAAAGATGATTCCTGTATGTATGGCAGCTATACATTAAGGAGGAGTCTACCAGAATATGAAAAAGTCAGCTGACCTAAATA
Seq C2 exon
TTGCTGAGACAAAGGAAAACCCACTCCCTTGGAGGAGCATGACCTTTTCCTGTAATTCTTCCCACTGCTGTTGTTGAGCTCCTTGGATCCTGGCTCCTGGACACCATCATCAAGAAGACTTTATGGATGGGCTGTCCACCCACTGAGAGAAGAGGAGCATCAGCTACAGTTTCTCTCTAGATTGCCTTCTTCATTTTGAGTAATGACTGTCAGCAGGGTCAGATTAAACACAAAACAACTGGACAATTGCTTGGAGGACTAAACTATAAGGGCACTAACATGTCAATAGTAGGCTAACACATCCATGGAAAATATATTTACCAGCTCTTCTCTCAGGGAGGATTCTGTGTGGGGTTGGAAGTAATGATTTGTTAAATTCCTTAGGGGTAGAAAGTAGGGCATAATCAGAATATAGAGGAATATGCTGTTTGACTTCAGGGTTTCTGTTTTTCTTACTAGGATATATAAAACAGGGACTCTAGCTAGATTGTTTATGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231764-'0-8,'0-5,13-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATGTGCTCACTCAACC
R:
TCTGACCCTGCTGACAGTCAT
Band lengths:
356-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development