MmuALTD1036989-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000091867 | Cyp2a22
Description
cytochrome P450, family 2, subfamily a, polypeptide 22 [Source:MGI Symbol;Acc:MGI:3648316]
Coordinates
chr7:26936309-26937812:-
Coord C1 exon
chr7:26937712-26937812
Coord A exon
chr7:26937707-26937711
Coord C2 exon
chr7:26936309-26936485
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTTCTCCCCCCACCCCCAGCTC
3' ss Score
9.96
Exon sequences
Seq C1 exon
CTCCATTGTCTTCGGGGACCGCTTCAACTACGAGGACAAAGAGTTCCTGTCACTGCTGCAGATGATGAGTCAAATGAACCAATTTGCTGCTTCACCCACAG
Seq A exon
GTCAG
Seq C2 exon
CTCTATGACATGTTCCATTCAGTGATGAAGTACCTGCCCGGACCACAGCAACAGATCATCAAGGATTCTCATAAACTGGAAGACTTCATGATACAGAAAGTGAAGCACAACCACAGTACCCTGGACCCCAATTCCCCACGAGGCTTCATTGACTCCTTTCTCATCCACATGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091867-5-4,6-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTGTCACTGCTGCAG
R:
CGGGCAGGTACTTCATCACTG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types