MmuALTD1038986-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062825 | Actg1
Description
actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
Coordinates
chr11:120345690-120348525:-
Coord C1 exon
chr11:120348425-120348525
Coord A exon
chr11:120348221-120348424
Coord C2 exon
chr11:120345690-120346533
Length
204 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGCC
5' ss Score
2.82
3' ss Seq
TCAGTGTTTTTCCTCCACAGATC
3' ss Score
12.13
Exon sequences
Seq C1 exon
GCTTAAATAGCGGCGGGGGAGGCCGCGGTCGGTCTCACACTCCGCCGCCGGCTTACACTGCGCTTCTTGCCGCTCCTCCGTCGCCGCCGCGTCCTTCGCCG
Seq A exon
GTAAGCTGCCGCTCCCCGGGCTTGGCCCAGTGACTTCCTGTGGCCCTTTCTTCCCGCTCACCCTGCCTGCCGCACCGCTGCGGAGCGGAGCGGAGCGCAGGGCGCCTGACGGGTGGGCCTGGGTCTGCAGCCGCGGCTGGGGGCAGGGCGGGGCCCGACGCAATGCGCAGCCCCTCCTCGCCGCGGCGGAACGGGGCGCTGCCG
Seq C2 exon
ATCATTGCTCCCCCTGAGCGCAAGTACTCAGTCTGGATCGGTGGCTCCATTCTGGCCTCACTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCAGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGATGGACTGAGCAGGTGCCAGGCATCTGCTGCATGAGCTGATATTGAAGTATCAATTTGCCCTGGCAAATGTACACACCTCATGCTAGCCTCATGAAACTGGAATAAGCCTTTGAAAAGAAATTTGTCCTTGAAGCTTGTATCTGATATCAGCACTGGATCGTAGAACTTGTTGCTGATTTTTGACCTTGTATTCAAGTTAACTGCTCCCTTGGTATATGTTTAATACCCTGTGCATATCTTGATTTAGTCCTTAGTTCATGTGGCTCGGTCACTTGGGGGCTGGGGAGAGCACGCTGTAGATGAGAAAGCCCCAGCCTGGTGGATCTCTGTGAGCACCACTGAGTGATCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062825-0-13,1-13,2-13,3-13-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002214=Actin=PD(12.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTACACTGCGCTTCTT
R:
TCATGAGGCTAGCATGAGGTGT
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types