MmuEX1003152 @ mm10
Exon Skipping
Gene
ENSMUSG00000062825 | Actg1
Description
actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
Coordinates
chr11:120346637-120348097:-
Coord C1 exon
chr11:120347969-120348097
Coord A exon
chr11:120347863-120347875
Coord C2 exon
chr11:120346637-120346818
Length
13 bp
Sequences
Splice sites
3' ss Seq
CGCGGCCTTTTCTCTCGCAGGGC
3' ss Score
12.02
5' ss Seq
TGGGCATGG
5' ss Score
-1.52
Exon sequences
Seq C1 exon
ATCGCAATGGAAGAAGAAATCGCCGCACTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCCGGCTTTGCTGGCGACGACGCCCCCAGGGCCGTGTTCCCTTCCATCGTAGGGCGCCCCCGACACCAG
Seq A exon
GGCGTCATGGTGG
Seq C2 exon
GCATGGAGTCCTGTGGTATCCATGAGACCACTTTCAACTCCATCATGAAGTGTGATGTGGATATCCGCAAAGACCTGTATGCCAATACAGTGCTGTCTGGTGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTAGCACCTAGCACGATGAAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062825-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(79.6=95.1)
A:
PF0002214=Actin=FE(8.2=100),PF0002214=Actin=PU(2.7=60.0)
C2:
PF0002214=Actin=PD(8.2=6.6),PF0002214=Actin=FE(54.1=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTCCCTTCCATCGTAGG
R:
TGCGGATATCCACATCACACT
Band lengths:
106-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types