DreEX0010905 @ danRer10
Exon Skipping
Gene
ENSDARG00000037870 | actb2
Description
actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
Coordinates
chr3:40385287-40386473:-
Coord C1 exon
chr3:40386344-40386473
Coord A exon
chr3:40386014-40386253
Coord C2 exon
chr3:40385287-40385311
Length
240 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTCCTTGCATTACAGGGT
3' ss Score
9.01
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAG
Seq A exon
GGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAG
Seq C2 exon
GCCCTGTTCCAGCCATCCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037870_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.212 C2=0.007
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(31.7=95.1),PF101834=ESSS=PU(19.4=31.7)
A:
PF0002214=Actin=FE(64.2=100),PF101834=ESSS=PD(77.6=65.0)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATGATGAAATTGCCGC
R:
CCAAGAAGGATGGCTGGAACA
Band lengths:
150-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]