MmuEX1003149 @ mm10
Exon Skipping
Gene
ENSMUSG00000029580 | Actb
Description
actin, beta [Source:MGI Symbol;Acc:MGI:87904]
Coordinates
chr5:142904344-142905692:-
Coord C1 exon
chr5:142905564-142905692
Coord A exon
chr5:142905429-142905476
Coord C2 exon
chr5:142904344-142904782
Length
48 bp
Sequences
Splice sites
3' ss Seq
AAGGCTGTTCCCTTCCACAGGGT
3' ss Score
9.07
5' ss Seq
GAGGCCCAG
5' ss Score
-11.54
Exon sequences
Seq C1 exon
TTCGCCATGGATGACGATATCGCTGCGCTGGTCGTCGACAACGGCTCCGGCATGTGCAAAGCCGGCTTCGCGGGCGACGATGCTCCCCGGGCTGTATTCCCCTCCATCGTGGGCCGCCCTAGGCACCAG
Seq A exon
GGTGTGATGGTGGGAATGGGTCAGAAGGACTCCTATGTGGGTGACGAG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACAGGCATTGTGATGGACTCCGGAGACGGGGTCACCCACACTGTGCCCATCTACGAGGGCTATGCTCTCCCTCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATCGTGCGTGACATCAAAGAGAAGCTGTGCTATGTTGCTCTAGACTTCGAGCAGGAGATGGCCACTGCCGCATCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGCCAGGTCATCACTATTGGCAACGAGCGGTTCCGATGCCCTGAGGCTCTTTTCCAGCCTTCCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029580_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.198 C2=0.004
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(10.4=95.1)
A:
PF0002214=Actin=PU(8.8=31.2)
C2:
PF0002214=Actin=FE(39.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTCCCCTCCATCGTGGG
R:
CTCCGGAGTCCATCACAATGC
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types