DreEX0010899 @ danRer10
Exon Skipping
Gene
ENSDARG00000037746 | actb1
Description
actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
Coordinates
chr1:7965986-7967499:-
Coord C1 exon
chr1:7967375-7967499
Coord A exon
chr1:7966736-7966975
Coord C2 exon
chr1:7965986-7966424
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTTTCTTCCTCTAGGGA
3' ss Score
12.06
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAG
Seq A exon
GGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAG
Seq C2 exon
ATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGCCTTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037746-'4-7,'4-3,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.158 C2=0.007
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(16.7=95.1),PF101834=ESSS=PU(18.6=31.7)
A:
PF0002214=Actin=FE(33.9=100),PF101834=ESSS=PD(78.6=68.8)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGTTTTCCCCTCCATT
R:
ATTTCTCTTTCGGCCGTGGTG
Band lengths:
302-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]