RnoEX0006293 @ rn6
Exon Skipping
Gene
ENSRNOG00000034254 | Actb
Description
actin, beta [Source:RGD Symbol;Acc:628837]
Coordinates
chr12:13716855-13717198:+
Coord C1 exon
chr12:13716855-13716983
Coord A exon
chr12:13717071-13717083
Coord C2 exon
chr12:13717098-13717198
Length
13 bp
Sequences
Splice sites
3' ss Seq
AACGTTGTTCTCCTCCGCAGGGT
3' ss Score
11.45
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
TTCGCCATGGATGACGATATCGCTGCGCTCGTCGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCTCCCCGGGCCGTCTTCCCCTCCATCGTGGGCCGCCCTAGGCACCAG
Seq A exon
GGTGTGATGGTGG
Seq C2 exon
GACTCCTACGTGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATTGAACACGGCATTGTCACCAACTGGGACGATATGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034254-'9-4,'9-3,10-4
Average complexity
S*
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.113 C2=NA
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(10.4=95.1)
A:
PF0002214=Actin=FE(21.1=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCCCTCCATCGTGGG
R:
ATGGGGTACTTCAGGGTCAGG
Band lengths:
98-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]