GgaEX1006099 @ galGal4
Exon Skipping
Gene
ENSGALG00000009621 | ACTB
Description
Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60706]
Coordinates
chr14:4170676-4172343:-
Coord C1 exon
chr14:4172203-4172343
Coord A exon
chr14:4171642-4171881
Coord C2 exon
chr14:4170676-4171114
Length
240 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTCTTTGTTGTGCAGGGT
3' ss Score
8.4
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTCCTCCGCAGCCAGCCATGGATGATGATATTGCTGCGCTCGTTGTTGACAATGGCTCCGGTATGTGCAAGGCCGGTTTCGCCGGGGACGATGCCCCCCGTGCTGTGTTCCCATCTATCGTGGGTCGCCCCAGACATCAG
Seq A exon
GGTGTGATGGTTGGTATGGGCCAGAAAGACAGCTACGTTGGTGATGAAGCCCAGAGCAAAAGAGGTATCCTGACCCTGAAGTACCCCATTGAACACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACTTTCTACAATGAGCTGAGAGTAGCCCCTGAGGAGCACCCTGTGCTGCTCACAGAGGCTCCCCTGAACCCCAAAGCCAACAGAGAGAAGATGACACAG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCAGCCATGTATGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACTGGTATTGTGATGGACTCTGGTGATGGTGTTACCCACACTGTGCCCATCTATGAAGGCTACGCCCTCCCCCACGCCATCCTCCGTCTGGATCTGGCTGGCCGTGACCTGACGGACTACCTCATGAAGATCCTGACAGAGAGAGGCTACAGCTTCACCACCACAGCCGAGAGAGAAATTGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCACTGGATTTCGAGCAGGAGATGGCCACAGCTGCCTCTAGCTCTTCCCTGGAGAAGAGCTATGAACTCCCTGATGGTCAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCCGAGGCCCTCTTCCAGCCATCTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009621-'1-5,'1-1,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(10.4=95.1)
A:
PF0002214=Actin=FE(21.1=100)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTCCGGTATGTGCAAG
R:
TGAGGTAGTCCGTCAGGTCAC
Band lengths:
295-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]