HsaEX1002534 @ hg38
Exon Skipping
Gene
ENSG00000075624 | ACTB
Description
actin beta [Source:HGNC Symbol;Acc:HGNC:132]
Coordinates
chr7:5528281-5530604:-
Coord C1 exon
chr7:5530524-5530604
Coord A exon
chr7:5529388-5529400
Coord C2 exon
chr7:5528281-5528719
Length
13 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCTTTCCTTCCCAGGGC
3' ss Score
11.58
5' ss Seq
TGGGCATGG
5' ss Score
-1.52
Exon sequences
Seq C1 exon
ACCACCGCCGAGACCGCGTCCGCCCCGCGAGCACAGAGCCTCGCCTTTGCCGATCCGCCGCCCGTCCACACCCGCCGCCAG
Seq A exon
GGCGTGATGGTGG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTTGCTATCCAGGCTGTGCTATCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAAGAGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075624-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.181 C2=0.002
Domain overlap (PFAM):
C1:
NA
A:
PF0002214=Actin=PD(48.1=95.0)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGCCTCGCCTTTGC
R:
ATAGCAACGTACATGGCTGGG
Band lengths:
94-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains