GgaEX1006105 @ galGal4
Exon Skipping
Gene
ENSGALG00000028749 | ACTG1
Description
actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
Coordinates
chr18:9470423-9471643:+
Coord C1 exon
chr18:9470423-9470576
Coord A exon
chr18:9470662-9470901
Coord C2 exon
chr18:9471205-9471643
Length
240 bp
Sequences
Splice sites
3' ss Seq
TGACTGCGGTGTGCCTGTAGGGC
3' ss Score
8.61
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACGGTGCGGCCGTCCCGCAGAGCACCCCAGGATGGAAGAGGAGATCGCAGCGCTCGTGATCGACAATGGCTCCGGCATGTGCAAGGCGGGATTCGCCGGGGATGACGCTCCCCGCGCCGTGTTCCCGTCCATCGTGGGCCGCCCCCGGCACCAG
Seq A exon
GGCGTGATGGTGGGCATGGGGCAGAAGGACAGCTATGTGGGCGATGAGGCGCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGCGTGGCGCCCGAGGAGCACCCGGTGCTGCTCACGGAGGCGCCGCTCAACCCCAAGGCCAACCGCGAGAAGATGACGCAG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCTGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCCGGTCGCACCACGGGCATCGTTATGGACTCTGGGGACGGTGTCACCCACACGGTGCCCATCTATGAGGGCTACGCTCTGCCCCACGCCATCCTGCGTCTGGACCTGGCCGGCCGCGACCTGACCGACTACCTCATGAAGATCCTGACAGAGAGGGGCTACAGCTTCACCACCACGGCTGAGAGGGAAATCGTGCGTGACATCAAAGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCTGCCTCTTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGGCAGGTCATCACCATCGGCAACGAGCGGTTCCGGTGTCCGGAGGCTCTGTTCCAACCCTCTTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028749-'2-5,'2-0,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(31.7=95.1),PF101834=ESSS=PU(19.4=31.7)
A:
PF0002214=Actin=FE(64.2=100),PF101834=ESSS=PD(77.6=65.0)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGATCGACAATGGCTCC
R:
ATGAGGTAGTCGGTCAGGTCG
Band lengths:
308-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]