RnoEX0048056 @ rn6
Exon Skipping
Gene
ENSRNOG00000036701 | LOC100361457
Description
actin, gamma 1 propeptide-like [Source:RGD Symbol;Acc:2320108]
Coordinates
chr10:109519666-109520846:-
Coord C1 exon
chr10:109520724-109520846
Coord A exon
chr10:109520618-109520630
Coord C2 exon
chr10:109519666-109520104
Length
13 bp
Sequences
Splice sites
3' ss Seq
TGACCGGTCTTTTCTCGTAGGGT
3' ss Score
10.11
5' ss Seq
TGGGCATGG
5' ss Score
-1.52
Exon sequences
Seq C1 exon
ATGGAAGAAGAAATCGCCGCCCTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCCCAGGGCCGTGTTTCCTTCCATCGTCGGGCGCCCCCGACACCAG
Seq A exon
GGTGTCATGGTGG
Seq C2 exon
ATAATGTTTGAAACCTTCAATACCCCAGCCATGTACGTGGCCATTCAGGCGGTGCTCTCCTTGTATGCATCTGGGCGTACCACTGGCATTGTCATGGACTCTGGTGACGGGGTCACACACACAGTGCCCATCTATGAGGGCTACGCCCTTCCCCACGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACTGAAAGGGGCTACAGCTTTACCACCACTGCTGAGAGGGAAATTGTTCGTGACATAAAGGAGAAGCTGTGCTATGTTGCCCTGGATTTTGAGCAAGAAATGGCTACTGCTGCATCATCTTCCTCTTTGGAGAAGAGTTATGAGCTGCCTGATGGGCAGGTGATCACCATTGGCAATGAGCGCTTCCGGTGTCCAGAGGCTCTCTTCCAGCCTTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036701-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(10.4=95.1)
A:
PF0002214=Actin=FE(21.1=100)
C2:
PF0002214=Actin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCCTTCCATCGTCGGG
R:
ATGCATACAAGGAGAGCACCG
Band lengths:
106-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]