HsaEX0002139 @ hg19
Exon Skipping
Gene
ENSG00000184009 | ACTG1
Description
actin, gamma 1 [Source:HGNC Symbol;Acc:144]
Coordinates
chr17:79477953-79479386:-
Coord C1 exon
chr17:79479258-79479386
Coord A exon
chr17:79479156-79479168
Coord C2 exon
chr17:79477953-79478134
Length
13 bp
Sequences
Splice sites
3' ss Seq
TGACGGGTCGTCCCCTGCAGGGC
3' ss Score
9.38
5' ss Seq
TGGGCATGG
5' ss Score
-1.52
Exon sequences
Seq C1 exon
GTCGCAATGGAAGAAGAGATCGCCGCGCTGGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGTTTTGCTGGGGACGACGCTCCCCGAGCCGTGTTTCCTTCCATCGTCGGGCGCCCCAGACACCAG
Seq A exon
GGCGTCATGGTGG
Seq C2 exon
GTATGGAATCTTGCGGCATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGTACGCCAACACGGTGCTGTCGGGCGGCACCACCATGTACCCGGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTGGCGCCCAGCACCATGAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184009-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(34.2=95.1),PF101834=ESSS=PU(19.4=31.7)
A:
PF0002214=Actin=FE(62.3=100),PF101834=ESSS=PD(77.6=72.2)
C2:
PF0002214=Actin=FE(16.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCCTTCCATCGTCGGG
R:
CGGATGTCCACGTCACACTTC
Band lengths:
103-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)