MmuALTD1040674-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025950 | Idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
Coordinates
chr1:65175231-65186405:-
Coord C1 exon
chr1:65186305-65186405
Coord A exon
chr1:65186209-65186304
Coord C2 exon
chr1:65175231-65175368
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TTTTTTTTTTTTTAAATTAGGGT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GCTGTTACCGTATGTGTTCAACAACGTGAGCACATATAATTTAGGACCGCTCTCAGAGCTCTCTTGGACCGACTTCTACCTGTGTAGTCCAGAGTGAAGAG
Seq A exon
GTAGTTAATTAGCTTTCAGGATCCTTTCAGGACTCCGCTAACACCAACTATGTGTCTTTGAACAAATCGCTTGTTTCTCTAGGCCTCACACCTCTG
Seq C2 exon
GGTTATTGAAGTAAAAATGTCCAGAAAAATCCAAGGAGGTTCTGTGGTGGAGATGCAAGGAGATGAAATGACACGAATCATTTGGGAATTGATTAAGGAAAAACTTATTCTTCCCTATGTGGAACTGGATCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025950-0-11,1-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(23.7=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCTCTCTTGGACCGAC
R:
GCAGATCCAGTTCCACATAGGG
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types