MmuEX0023578 @ mm10
Exon Skipping
Gene
ENSMUSG00000025950 | Idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
Coordinates
chr1:65175231-65186500:-
Coord C1 exon
chr1:65186305-65186500
Coord A exon
chr1:65181628-65181698
Coord C2 exon
chr1:65175231-65175368
Length
71 bp
Sequences
Splice sites
3' ss Seq
GATCCTATCCCTTCCTGTAGAAG
3' ss Score
7.82
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAGAGGACTTAACGCTGCCTCAGCCATCCTGAAGGAAGCGGGGAGGACGGTGCATGTGAGCATCACGCGCGCCAGGCATTAGACGCCAGCCAGTCGCTGTTACCGTATGTGTTCAACAACGTGAGCACATATAATTTAGGACCGCTCTCAGAGCTCTCTTGGACCGACTTCTACCTGTGTAGTCCAGAGTGAAGAG
Seq A exon
AAGAGTGTCTGTCACTCAAAAACCAAGTGCAACCGTTATCTTTGCTGTTCTCCTGCTGGTAATCGTAACTG
Seq C2 exon
GGTTATTGAAGTAAAAATGTCCAGAAAAATCCAAGGAGGTTCTGTGGTGGAGATGCAAGGAGATGAAATGACACGAATCATTTGGGAATTGATTAAGGAAAAACTTATTCTTCCCTATGTGGAACTGGATCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025950_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(23.7=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCGCTGTTACCGTATG
R:
TCCTTGCATCTCCACCACAGA
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types