MmuALTD1040925-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27335653-27337777:-
Coord C1 exon
chr7:27337677-27337777
Coord A exon
chr7:27337388-27337676
Coord C2 exon
chr7:27335653-27335711
Length
289 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TCCCACTCTCCTATTTACAGTGT
3' ss Score
8.15
Exon sequences
Seq C1 exon
CCTCCCATGTCGCTTACCGATTGGCCTCACTCGGAGCGCTGACAGTGCAGGGCTCTGATTGGCGGGAAGTTTCACAGCCCCAGGCTTGCACGGTGGAGAAA
Seq A exon
GTGAGTCGGCCTCTGGCTGAGGCGGGGGTAGGGGGCGGGACCGGGGCCAGGCCGATCCGGACCCACTGGACACACTGCCCTCTTGGAGCCGGACTCTGCACCCGACACGATGCGCCGGCCTGGCCTCGGCGGCCCCTGCCCCCTCTTGCTGCTGCTGCTGCTCCCAGCCGCCACATCTGCTAGCGGCTCCAGTCCCAGCCCCAGCCCCAGCCCCATCGAGAAAGCGGTGGTCCCGAGCCACCAGGCCGGGTAAGCCCACTGCAGCGTCTTCTTCCTCGTGCTGTACCCA
Seq C2 exon
TGTTGCTGCCTGTCACTGCTGCCTAGACCAGACACCTAAGAGTAGCCGCTGCACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-1-0,2-0,3-0,4-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCATGTCGCTTACCGA
R:
GGTGCAGCGGCTACTCTTAG
Band lengths:
156-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types