MmuEX6009229 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27335397-27339728:-
Coord C1 exon
chr7:27339628-27339728
Coord A exon
chr7:27335653-27335711
Coord C2 exon
chr7:27335397-27335535
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCCCACTCTCCTATTTACAGTGT
3' ss Score
8.15
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCTAGAGGCTGTTGCCTAGCAACGAGCATTGCCGATGCCCTGGATCCTGGGCAGAAGGGAGAAATTTCGGCAGCACCCCCAGCAAATGCTCCAGCCACAGG
Seq A exon
TGTTGCTGCCTGTCACTGCTGCCTAGACCAGACACCTAAGAGTAGCCGCTGCACCCGAG
Seq C2 exon
CTTCCTGCAGGGTCCGGAACTGCCCACCTGCCAAGTGCACAGGTCTAGAGGGGTGCCTGACCCCAACACCTTCGGTGCCCAGCCCCAGCCGCAGTCCCGTGGAGAAGAGTCAGGTATCCCTCAACTGGCAGCCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'0-1,'0-0,9-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.397
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGCTCCAGCCACAGG
R:
CTGACTCTTCTCCACGGGACT
Band lengths:
133-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types