BtaEX6082464 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50173268-50175548:+
Coord C1 exon
chr18:50173268-50173416
Coord A exon
chr18:50175195-50175253
Coord C2 exon
chr18:50175410-50175548
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCATCCCTCTATTTATAGTGC
3' ss Score
7.68
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATGCGGCTGCCTGGCCCCAGCGGCCGCCGCCCCCTCCTGCTGGTGCTGCTGCTGCCGCTCCTTGCAGCCGCCGCCACTGCCGCCTCCGCCGCCGGCCCCAGCACCAGCCAGGCCGTCGAGGTCGCGGCGATCCCGGGCCGTCCGGCCGG
Seq A exon
TGCTCCTGCTTGTCGCTGCTGTCCAAGCCGATCGCCCAGGAGAAGCCGCTGCTTTAGAG
Seq C2 exon
CCTCCTGCAGGGTCCGGAGCTGCCGGCCCGAAAAGTGTGCAGGCCTTCAGCGTTGCCTGGCTCCAGGGCCCCCAGAGCTGCAGAGCGCCAGCCCCAGCGTGAGGAAGAGACAGGTGTCCCTTAACTGGCAGCCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757-'1-2,'1-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTGGTGCTGCTG
R:
CTCCGGACCCTGCAGGAG
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]