RnoEX0051396 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84147755-84152114:-
Coord C1 exon
chr1:84152014-84152114
Coord A exon
chr1:84148019-84148077
Coord C2 exon
chr1:84147755-84147893
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCCTCCTGTTACAGTGC
3' ss Score
9.8
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GCCAGAGGCTGTTGCCTAGCAACGAGCATTGACGATGCCCTGGATCCTGGGCAGAAGGGAGAAATTTCGGCAGCACCCCCAGCAAATGCTCCAGCCACAGG
Seq A exon
TGCTGCTGCCTGTCGTTGCTGCTTAGCCCAGACACCTAGGAGTAGCCACTGCACCCGAG
Seq C2 exon
CTTCCTGCAGGGTCCGGAGCTGCCCACCCGGCAGGTGTACAGATCAACAGGGGTGCCTGACCCCAACACCTTCGGTGCCCAGCCCCAGCCGCAGTCCGGTGGAGAAGAGACAGGTATCCCTCAACTGGCAGCCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'0-1,'0-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACGATGCCCTGGATCC
R:
AGGCACCCCTGTTGATCTGTA
Band lengths:
133-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]