MmuALTD1040978-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127287627-127288809:-
Coord C1 exon
chr10:127288709-127288809
Coord A exon
chr10:127288350-127288708
Coord C2 exon
chr10:127287627-127287690
Length
359 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TCTCTTTCCTTGTATTGCAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTACCGGAGGCTCGGGCTCCACCGACCCACCTCCCACCCCCTCCCACTCACCCTCTGGGCCGCGACTGCGCAGGGCGGGGCCAGCCGAACCATGGGCCGCG
Seq A exon
GTGAGTGCGGGGCCCGGCCCCCCCGCCCCTCCCCCTCCCTTCTCTCTCCTCCCCTTCTGTCCCTACCCTCTGCCCCCTCCGCGTCCTTTCGGCCCCTTTCCCTGGCCCCATCCACAGCCCCGCACCCTCACCTGCCCCCGCCATTTCTCCTCCCAAAGTGCCTGACTTCTGCCTTCCTGACCTCGCTCCCTTCAGTGCTTCGCCCACCCTCCACCCGCCCTCTCCCCAAGTTCCTTCCTACTTCGTGCGCCTGCCTTCCCCTCCTCCCCGAGCTGAAGGAAGCAGTCTGGGTGACAGGGCGCCTTGTTATGAGAGGGAAAGTTTGGAAGCCGTCAGTGTGCGGCGGGAGCGATGGTGAG
Seq C2 exon
GTGTGGGCTAAGCTGGTGGCCCCGGCTTTAGACTGGATCCCACAATGTTTGCAGAGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.425
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142914=MBD=PU(32.9=57.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types