MmuALTD1041549-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040478 | Prdm13
Description
PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
Coordinates
chr4:21683850-21685655:-
Coord C1 exon
chr4:21685555-21685655
Coord A exon
chr4:21685511-21685554
Coord C2 exon
chr4:21683850-21683981
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GACCACTGCTTGTATTGCAGGTG
3' ss Score
8.84
Exon sequences
Seq C1 exon
AATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGG
Seq A exon
GCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAAAAAG
Seq C2 exon
GTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCAGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTACCAGGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040478-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0085623=SET=PU(44.7=38.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGCTGACTGCTGCATC
R:
TGCCCGGATTAACCCTATCCA
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types