MmuALTD1042862-3/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000096916 | Zfp850
Description
zinc finger protein 850 [Source:MGI Symbol;Acc:MGI:3036281]
Coordinates
chr7:28012336-28014173:-
Coord C1 exon
chr7:28014073-28014173
Coord A exon
chr7:28014016-28014072
Coord C2 exon
chr7:28012336-28012450
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ATCTTCTGAACTCACTTAAGGAC
3' ss Score
4.51
Exon sequences
Seq C1 exon
GCATGCTGGGACCTTTCGGAAACGCCGGGCTTCTTGAAGGCTCCACATAGCTCCGGACGCCGCCAAGGGTCTTTGGCATCCCGGTGCCACCAACACGGAAG
Seq A exon
GTCTGATCTTTCTGGTCCAAAGAAATTGCTGGTTGGCTTCGGTCTCCACAGAGTAAG
Seq C2 exon
GACCTACGCCTCCCACTGTCAACCATGATGCTGCACATCCGGCCTCAGCCACTCAAACCCCAGTACCCAGCATCCTACTTGGTTCTATGAGAAAACAGCTTCAGATTCTACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096916-0-4,1-4,2-4,3-4,4-4,5-4-3/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGGACCTTTCGGAAAC
R:
TGTGCAGCATCATGGTTGACA
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types