MmuEX0053660 @ mm10
Exon Skipping
Gene
ENSMUSG00000096916 | Zfp850
Description
zinc finger protein 850 [Source:MGI Symbol;Acc:MGI:3036281]
Coordinates
chr7:28008384-28014115:-
Coord C1 exon
chr7:28014016-28014115
Coord A exon
chr7:28012336-28012450
Coord C2 exon
chr7:28008384-28008436
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTGAACTCACTTAAGGAC
3' ss Score
4.51
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCCGCCAAGGGTCTTTGGCATCCCGGTGCCACCAACACGGAAGGTCTGATCTTTCTGGTCCAAAGAAATTGCTGGTTGGCTTCGGTCTCCACAGAGTAAG
Seq A exon
GACCTACGCCTCCCACTGTCAACCATGATGCTGCACATCCGGCCTCAGCCACTCAAACCCCAGTACCCAGCATCCTACTTGGTTCTATGAGAAAACAGCTTCAGATTCTACACAA
Seq C2 exon
GGGAGGAAACCTGAAGAAGAATGGCCAGCTCTAATTCTCAAGACATGGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096916_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGGGTCTTTGGCATCC
R:
ACCATGTCTTGAGAATTAGAGCTGG
Band lengths:
146-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types