MmuEX0000331 @ mm10
Exon Skipping
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30800724-30803635:-
Coord C1 exon
chr2:30803550-30803635
Coord A exon
chr2:30800914-30801001
Coord C2 exon
chr2:30800724-30800816
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTGTCCCCACCCAGCAC
3' ss Score
6.21
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
AGGTGGAAAGATGGGCTCTCCCAGCAAATAGCCCACCTGTCAGGGGGCTCTAAACTTACAGGACCTTCTGTGGCCTCACCCAGCAG
Seq A exon
CACCCTCAGCGCCACATAACCCTAGGAGTACATCAAATCACTGCCTAGCTTCTCGGTCTTCCAGCTGCTTATTCCTCCCAGACCTGTG
Seq C2 exon
GGACAAACCATTGCACTGGGACAACAATTTTAAAGAGAAGACTACCCTGGGGCTCCCAAGAGGTGAACTTGCCAGAGCCAAAAAGGCCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.467 C2=0.578
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAAAGATGGGCTCTCC
R:
TTGGCTCTGGCAAGTTCACC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types