MmuEX0000340 @ mm9
Exon Skipping
Gene
ENSMUSG00000085831 | 1700003G13Rik
Description
RIKEN cDNA 1700003G13 gene [Source:MGI Symbol;Acc:MGI:1919479]
Coordinates
chr9:45127176-45130162:-
Coord C1 exon
chr9:45130050-45130162
Coord A exon
chr9:45129452-45129603
Coord C2 exon
chr9:45127176-45127402
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCAACCCTTTTCTTTGGCAGGTG
3' ss Score
9.47
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
GAACTCCCACATATTCGCACTAAGTCACAGGGAACAAGGCAGAATGAGGTTCAGTGGGGTGTGCCAGGTGTGTGTTGATCAGCACCAATGACAGCATGAAACTGATGTTCCAG
Seq A exon
GTGGGGAGACTGAAGAGGAGCCAGTTGTAGACACAAGATAGAGATCGTGACGAGAAAGTCACATGTTATGACGGTGGCTGCATCTCTGATGTATCAGAGGACATTCTAAAGAAGCCCTGACACACAAAAGGCTTCTGAGACTCCTGCACCAG
Seq C2 exon
GGACTAAGATGAAGCAGTTGAAATCACTGGATCCCAGGCAGCTTCCAGCCAGCAGAGACATTCTGTCTTCCCTACACTCGGGGCAGGTCTTGGCAGCACCCTGCCTGACTCCAGCCTGTCCCTTCTCATGCCTGGGAAAGCCCAGGAGACCGCGGCGCACTCACCCGGTGGCTGCCTCTGTCCATGGTGTAAGAGAATGCTTCTTCCAGGCTCAGCTGATGTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085831_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACCAATGACAGCATGA
R:
GCTGAGCCTGGAAGAAGCATT
Band lengths:
251-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: