MmuEX0000340 @ mm10
Exon Skipping
Gene
ENSMUSG00000085831 | 1700003G13Rik
Description
RIKEN cDNA 1700003G13 gene [Source:MGI Symbol;Acc:MGI:1919479]
Coordinates
chr9:45319093-45322079:-
Coord C1 exon
chr9:45321967-45322079
Coord A exon
chr9:45321369-45321520
Coord C2 exon
chr9:45319093-45319319
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCAACCCTTTTCTTTGGCAGGTG
3' ss Score
9.47
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
GAACTCCCACATATTCGCACTAAGTCACAGGGAACAAGGCAGAATGAGGTTCAGTGGGGTGTGCCAGGTGTGTGTTGATCAGCACCAATGACAGCATGAAACTGATGTTCCAG
Seq A exon
GTGGGGAGACTGAAGAGGAGCCAGTTGTAGACACAAGATAGAGATCGTGACGAGAAAGTCACATGTTATGACGGTGGCTGCATCTCTGATGTATCAGAGGACATTCTAAAGAAGCCCTGACACACAAAAGGCTTCTGAGACTCCTGCACCAG
Seq C2 exon
GGACTAAGATGAAGCAGTTGAAATCACTGGATCCCAGGCAGCTTCCAGCCAGCAGAGACATTCTGTCTTCCCTACACTCGGGGCAGGTCTTGGCAGCACCCTGCCTGACTCCAGCCTGTCCCTTCTCATGCCTGGGAAAGCCCAGGAGACCGCGGCGCACTCACCCGGTGGCTGCCTCTGTCCATGGTGTAAGAGAATGCTTCTTCCAGGCTCAGCTGATGTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085831_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACCAATGACAGCATGA
R:
GCTGAGCCTGGAAGAAGCATT
Band lengths:
251-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types