MmuEX1026344 @ mm10
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45319100-45328789:+
Coord C1 exon
chr9:45319100-45319155
Coord A exon
chr9:45319884-45319989
Coord C2 exon
chr9:45328417-45328789
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTCTCTATTGATAGAGT
3' ss Score
7.4
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
ATCAGCTGAGCCTGGAAGAAGCATTCTCTTACACCATGGACAGAGGCAGCCACCGG
Seq A exon
AGTGGACTCTGAGACTCTAGAAAGTCCAACAAGCCCTGGGTTTGAAGAAATCCAGCTCACCATATGTTCTAGACTGTGCCTGGCTTGTGGTCCACTCTGAACCCGG
Seq C2 exon
AATTCTTCTCCAGCAAGGACACCTCCCCAGGCTTCCCCAGCAAGGACATCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACACCTCCTCAGGCCTCTCCAACAAGGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCCTCCTCAGGCTTCCCCAGCCCGGGCATCTCCAGCCCGGGCATCTCTAGCCAGGGCACCACCTTCCAGGTCATCATCGGGCAGATCATCATCTGCCAGGTCAGCCTCCACGACATCCTCCCCAACGAGAGTGTACCTTGTTAGAGCAACACCAGTGGGGGCTGTCCCCATCCGGGCATCTCCTGCCAGGTCAGCACCAGCCACCAGGGCCACCAGGGAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000034597fB18453
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACAGAGGCAGCCAC
R:
TGATCTGCCCGATGATGACCT
Band lengths:
256-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types