MmuEX0001038 @ mm9
Exon Skipping
Gene
ENSMUSG00000051297 | 2410124H12Rik
Description
RIKEN cDNA 2410124H12 gene [Source:MGI Symbol;Acc:MGI:1924035]
Coordinates
chr16:92478988-92497610:+
Coord C1 exon
chr16:92478988-92479213
Coord A exon
chr16:92492259-92492420
Coord C2 exon
chr16:92497295-92497610
Length
162 bp
Sequences
Splice sites
3' ss Seq
GAGTTTCTGTTAAATTCTAGTAT
3' ss Score
5.35
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTTCATTTCTTTAACATCGGGCGTGCGCACACATGCCTTCAGAGAAGCTGGGAGAAGGAAGGAGGAAAGGAGAAGGAGTTGAAAGGAGAAGGGAAGTTTGGATGAAGAGGATGTCGATTGGCTTGGAGAATGGTGGGGTCCAGAGCGCTACTTGCTCCGCCACGAGGTTCTGTCCACTCGCCCTGCTGGAGTCCCCAAGAGGTGATGCTATGGATGCGCTCATGAG
Seq A exon
TATTGTGACATTTCTAGAAGAGTCATCAGTCTTTGCTCTGGTGTCAAAAGTGAAGGTAGAGAAGCTTCCACTTCAGTCTCAGGAACCAGCGTGGCGTGAAGGCACTACTGCTTCAATGTCCTGTGTCTCCCCAGGGTCGACGACGGTTGTATCGCATTTAAG
Seq C2 exon
GGGTTTGTGCATGTGAGTGCAGGTGCCATTTGAAGCCAGAAGAGGGCGTTGGATCCTCAGAACTGGAGGAAGTTGTGAGCTACCTGATGTGGGTGCAGTACACACTCTTAATTCCAGAACCATTTCTCCAGCCTGCATGTGATTTTTAAAGTCATACATTCTGTTGTTTTGACGCATTGCGCCTATAGATTTGCATGTGTTGAGCCACCACTGCAACCTCCAACCTCCAACTTGATAGCCGTGGATGATCTTTTTGATATGCTGTTGTATTCAAACCCTTGGTGTTTTGTTAATAATGTTTGCATCTATACTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051297_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAGAAGGAAGGAGGAA
R:
CAGTTCTGAGGATCCAACGCC
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: