MmuEX0001038 @ mm10
Exon Skipping
Gene
ENSMUSG00000051297 | 2410124H12Rik
Description
RIKEN cDNA 2410124H12 gene [Source:MGI Symbol;Acc:MGI:1924035]
Coordinates
chr16:92478742-92497366:+
Coord C1 exon
chr16:92478742-92478968
Coord A exon
chr16:92492014-92492175
Coord C2 exon
chr16:92497050-92497366
Length
162 bp
Sequences
Splice sites
3' ss Seq
GAGTTTCTGTTAAATTCTAGTAT
3' ss Score
5.35
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
CGTTCATTTCTTTAACATCGGGCGTGCGCACACATGCCTTCAGAGAAGCTGGGAGAAGGAAGGAGGAAAGGAGAAGGAGTTGAAAGGAGAAGGGAAGTTTGGATGAAGAGGATGTCGATTGGCTTGGAGAATGGTGGGGTCCAGAGCGCTACTTGCTCCGCCACGAGGTTCTGTCCACTCGCCCTGCTGGAGTCCCCAAGAGGTGATGCTATGGATGCGCTCATGAG
Seq A exon
TATTGTGACATTTCTAGAAGAGTCATCAGTCTTTGCTCTGGTGTCAAAAGTGAAGGTAGAGAAGCTTCCACTTCAGTCTCAGGAACCAGCGTGGCGTGAAGGCACTACTGCTTCAATGTCCTGTGTCTCCCCAGGGTCGACGACGGTTGTATCGCATTTAAG
Seq C2 exon
GGGTTTGTGCATGTGAGTGCAGGTGCCATTTGAAGCCAGAAGAGGGCGTTGGATCCTCAGAACTGGAGGAAGTTGTGAGCTACCTGATGTGGGTGCAGTACACACTCTTAATTCCAGAACCATTTCTCCAGCCTGCATGTGATTTTTAAAGTCATACATTCTGTTGTTTTGACGCATTGCGCCTATAGATTTGCATGTGTTGAGCCACCACTGCAACCTCCAACCTCCAACTTGATAGCCGTGGATGATCTTTTTGATATGCTGTTGTATTCAAACCCTTGGTGTTTTGTTAATAATGTTTGCATCTATACTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051297-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
75%=67=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000162181fB7838
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAGAAGGAAGGAGGAA
R:
CAGTTCTGAGGATCCAACGCC
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types