MmuEX1006964 @ mm10
Exon Skipping
Gene
ENSMUSG00000022949 | Clic6
Description
chloride intracellular channel 6 [Source:MGI Symbol;Acc:MGI:2146607]
Coordinates
chr16:92485736-92528169:+
Coord C1 exon
chr16:92485736-92485891
Coord A exon
chr16:92497050-92497137
Coord C2 exon
chr16:92528060-92528169
Length
88 bp
Sequences
Splice sites
3' ss Seq
TATATATGTTATTCTTGCAGGGG
3' ss Score
9.11
5' ss Seq
GATGTGGGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
AGTCCTTGACTGAATGCTTTCGCTCGCTAAGGGAGGCAGGAGGCATAAGGGACAGATGCTAATTGGGTATCTGCGATGAGTCAGACACACTTTCAGCTCTTCATCTCCCGGACACAGAGGTCCTCTGACACCATCCCAGGTACCCGAGTATCCGAG
Seq A exon
GGGTTTGTGCATGTGAGTGCAGGTGCCATTTGAAGCCAGAAGAGGGCGTTGGATCCTCAGAACTGGAGGAAGTTGTGAGCTACCTGAT
Seq C2 exon
GCTGGTTATGACGGCGAGAGCATCGGAAACTGCCCATTTTCACAGCGTCTCTTTATGATCCTCTGGCTAAAGGGTGTTATATTCAATGTGACAACGGTGGACCTAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022949_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Inclusion Isoform:
ENSMUST00000162181fB7838
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTTCGCTCGCTAAGGG
R:
AAATGGGCAGTTTCCGATGCT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types