MmuEX0001045 @ mm10
Exon Skipping
Gene
ENSMUSG00000064308 | 2410137M14Rik
Description
RIKEN cDNA 2410137M14 gene [Source:MGI Symbol;Acc:MGI:1924047]
Coordinates
chr17:36977701-36978933:-
Coord C1 exon
chr17:36978651-36978933
Coord A exon
chr17:36978469-36978546
Coord C2 exon
chr17:36977701-36978106
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTCTCTCTTCCAGAGC
3' ss Score
12.17
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACTCCCCCCAAAACAAATGTGGCCCATCATTCAACGCTTGAAGGTGATGTCACCCTGAGATGCTGGGCCCTGGATTTCCACCCTGCTGTCATCATCCTGACCTGGCAGAGGGATGAGAAGGACCTGACTCAGGACATGGACCTTGTGGAGACCAGGCCTGCAGAGGACGAAGCCTTCCAGAAGTGGGCAGCTGTGGTGCTGCCTTCAGGAGAAGAGCATAAATACACATGCCATGTGCAACCTGAGGGGCTGTCTGAACCTCTCATCCTGAAATGGAGTAAAG
Seq A exon
AGCCATCTTTTTCTCCCACCACACCCATCACGGGGATCACTGCTGGTCTGGTTCTCCTTCCAGTTTTGGTCACTGGAG
Seq C2 exon
GTCTGTCTGCAACCATACCCCTGGAATATTGCCTGAGGTCTAGGACTAAGAGTTTCCTCTGGAACCAAATCGTTCTGCATTCTGTTCTCTGCCTTTATCCTCCCAGAGATGGAGAAGGATGTTAACTTTATTATTTTTATCATTTTATCTCCACCCCTTAACCTCAAGTCCCAGCACTGAAAGTCTCGAAAGGAAACAGAGACCTAGTCCCTCCCTCATTCTGTTAAACAACCCAGCAGCTGGGCACAGCCTGAGTCCTTGGCTCCACTGTGGCGGGAGTCCTGTATCTTGCATCGGATCTGGTGGTGTTTGGCTTTTGTATTCTGTCCCTGGATATGAAGGCTCAAGTTTGGAGTTTTGGATTTTTCTAAGATTAAAAAAAAAATCTGTGAGGCTCTAATGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064308-'1-2,'1-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGACCTTGTGGAGACCA
R:
TTCCAGGGGTATGGTTGCAGA
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types