MmuINT0002583 @ mm10
Intron Retention
Gene
ENSMUSG00000064308 | 2410137M14Rik
Description
RIKEN cDNA 2410137M14 gene [Source:MGI Symbol;Acc:MGI:1924047]
Coordinates
chr17:36977701-36978546:-
Coord C1 exon
chr17:36978469-36978546
Coord A exon
chr17:36978107-36978468
Coord C2 exon
chr17:36977701-36978106
Length
362 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GTTTTTTGACCCTGTTCCAGGTC
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGCCATCTTTTTCTCCCACCACACCCATCACGGGGATCACTGCTGGTCTGGTTCTCCTTCCAGTTTTGGTCACTGGAG
Seq A exon
GTGCGCTGCCATAGTGGTGAGGAGGGAAAGTGCAGATAAGGATGGTGTTTGAGATTTGGGTTTTCCTGAGATATTTCAAGCCCTGGATACAAATGTGCCAATTTTCTGTTTTGTTACTATAAAGTGTATCCATTAGTGTGTCTTAGCCACTTAGCGGCCTTTTTTTTTTTTTTTTTTTTTAAACCAACTGTGTAAGGAACACCTGGAAATAGAGGAGGGGGTGGTGCTTCACACAGAGGACTCTACTAATGTGGACACAAATCTGAGGCAGGGTCTCCAGGAAGAGGGAACGGGCCTCTGGGAGGGCACTCCATCTTTTTCCTATACAAATCCTTTCTTCATGTTTTTTGACCCTGTTCCAG
Seq C2 exon
GTCTGTCTGCAACCATACCCCTGGAATATTGCCTGAGGTCTAGGACTAAGAGTTTCCTCTGGAACCAAATCGTTCTGCATTCTGTTCTCTGCCTTTATCCTCCCAGAGATGGAGAAGGATGTTAACTTTATTATTTTTATCATTTTATCTCCACCCCTTAACCTCAAGTCCCAGCACTGAAAGTCTCGAAAGGAAACAGAGACCTAGTCCCTCCCTCATTCTGTTAAACAACCCAGCAGCTGGGCACAGCCTGAGTCCTTGGCTCCACTGTGGCGGGAGTCCTGTATCTTGCATCGGATCTGGTGGTGTTTGGCTTTTGTATTCTGTCCCTGGATATGAAGGCTCAAGTTTGGAGTTTTGGATTTTTCTAAGATTAAAAAAAAAATCTGTGAGGCTCTAATGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064308:ENSMUST00000039846:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGGTCTGGTTCTCCTT
R:
AAACACCACCAGATCCGATGC
Band lengths:
351-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types