MmuEX0001223 @ mm10
Exon Skipping
Gene
ENSMUSG00000020491 | 2810021J22Rik
Description
RIKEN cDNA 2810021J22 gene [Source:MGI Symbol;Acc:MGI:1917194]
Coordinates
chr11:58868815-58878868:+
Coord C1 exon
chr11:58868815-58869006
Coord A exon
chr11:58876694-58876820
Coord C2 exon
chr11:58878776-58878868
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAGAAATGTCTCATTACAGGGG
3' ss Score
2.92
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATCTGCCGTGGTGGCGCTCACCTGTAAGGCACCGTTCTGGCTTTTTGACTCAGCAACTATGTAGAGATATTGGAATCCACAAACGAGGCGTAGCGAGGACCTCACTTCTCACTTCTGTTGCCCAGCTTCTCCAGCTACAATTGCTGGGCACTCCATGTGCCTTGGCGAGTGAGGAGAATGAGCAGTATTGTG
Seq A exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
Seq C2 exon
ATCAGTGTGATGCCAAACCTGAGTTGATCCTGAAGTTGGAGCAAGGAGCTGGGCCATGGAAGGAAGACAATGCCCCAGACCAGAGCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020491_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTGTAAGGCACCGTTC
R:
CTGGGGCATTGTCTTCCTTCC
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types