RnoEX0048380 @ rn6
Exon Skipping
Gene
ENSRNOG00000023431 | LOC102555635
Description
zinc finger protein 39-like [Source:RGD Symbol;Acc:7511312]
Coordinates
chr10:45195610-45205588:+
Coord C1 exon
chr10:45195610-45195825
Coord A exon
chr10:45201889-45202015
Coord C2 exon
chr10:45205496-45205588
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAAAGTCTTCTCATTACAGGGC
3' ss Score
3.82
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATCCGCGGTGGTGGCTCTCACCTGTAAGACACTGCTCCCTCACCGGAGGCGTCTTTGTCGTGTTCTGGCTTTTGGCTCAGCAACTATGTAGAGATACTGGAATCCACCAACAAGGCCCAGCAAGGGCCTGTTCACTTCTGTTGCCCGTCTTTCCCTGCCGGCTGCGATTGCAAGGCACTCCGTGTGCCTTAGAGAGCGAGGATGGACACAGTCATG
Seq A exon
GGCTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGACGAGTGGCAGGACCTGGATGACGCTCAGAGGAAGCTCTACAGGGAGGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
Seq C2 exon
ATCAATGTGATGCCAAACCTGAGCTGATCCTGAAGTTGGAGCAAGGAGCTGAACCATGGAAGGAAGACGGTGCCGCAGACCCGAGCCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023431_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGACACTGCTCCCTCACCG
R:
TTCCATGGTTCAGCTCCTTGC
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]