RnoALTD0016013-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023431 | LOC102555635
Description
zinc finger protein 39-like [Source:RGD Symbol;Acc:7511312]
Coordinates
chr10:45201889-45205588:+
Coord C1 exon
chr10:45201889-45202015
Coord A exon
chr10:45202016-45202061
Coord C2 exon
chr10:45205496-45205588
Length
46 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAAT
5' ss Score
1.76
3' ss Seq
AGAATATTTCCTATTAATAGATC
3' ss Score
5.14
Exon sequences
Seq C1 exon
GGCTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGACGAGTGGCAGGACCTGGATGACGCTCAGAGGAAGCTCTACAGGGAGGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
Seq A exon
GTGAGTGACAGTCCCAGTCATGCTATTCGAAGCTTGTCCCTTTTTG
Seq C2 exon
ATCAATGTGATGCCAAACCTGAGCTGATCCTGAAGTTGGAGCAAGGAGCTGAACCATGGAAGGAAGACGGTGCCGCAGACCCGAGCCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023431-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGTGGACTTCACCTGG
R:
TCAGCTCAGGTTTGGCATCAC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]