MmuEX0001764 @ mm9
Exon Skipping
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:103817906-103866369:-
Coord C1 exon
chr2:103866287-103866369
Coord A exon
chr2:103834042-103834069
Coord C2 exon
chr2:103817906-103817973
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTCTCTGGACAGCTG
3' ss Score
10.48
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGTTGTGTGGTGAGAGAGGCTTGGGAAATCCAAAAGACGTCACAGGTCAGTCACTTACGTGGCTTGACTGTTCCATGTTCCA
Seq A exon
CTGGATCCATAACAGAGAATCCGGATGG
Seq C2 exon
GGATGGAGGCAGGAGCCCAGCGGGAGTCATTTACCCAGCTGCTTTCTGATGGACCTGGCAGGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGAGAGGCTTGGGAAA
R:
GCAGCTGGGTAAATGACTCCC
Band lengths:
117-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: