MmuEX0001764 @ mm10
Exon Skipping
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:103977749-104026212:-
Coord C1 exon
chr2:104026130-104026212
Coord A exon
chr2:103993885-103993912
Coord C2 exon
chr2:103977749-103977816
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTCTCTGGACAGCTG
3' ss Score
10.48
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGTTGTGTGGTGAGAGAGGCTTGGGAAATCCAAAAGACGTCACAGGTCAGTCACTTACGTGGCTTGACTGTTCCATGTTCCA
Seq A exon
CTGGATCCATAACAGAGAATCCGGATGG
Seq C2 exon
GGATGGAGGCAGGAGCCCAGCGGGAGTCATTTACCCAGCTGCTTTCTGATGGACCTGGCAGGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSMUST00000056170fB4967
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGAGAGGCTTGGGAAA
R:
GCAGCTGGGTAAATGACTCCC
Band lengths:
117-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types